Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 40.0 bits (92), Expect = 2e-08
 Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 14/121 (11%)

Query: 58  LFQRILQNAIRDYYRRSKVRSMWTTLLSSLTPGDDEDSDPLDTLEVEGKAGDSPEGSLEQ 117
           LFQ I +N + D++R+  + +          P  D   + L   + +  AG  PE  L  
Sbjct: 78  LFQ-IARNRLIDHWRKHGIHN----------PLHDSYDEQLHA-QADDSAG--PEQQLSL 123

Query: 118 SQVLAVIEAEISRLPGRQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHTLAAA 177
           S+  A ++A +  LP  QRE FL+R   D++V + AA  G    +VK+    A   L   
Sbjct: 124 SRDQARLDAALQGLPEDQREVFLLRLHGDLEVPQIAALTGTPLETVKSRLRYAQQKLRRL 183

Query: 178 L 178
           L
Sbjct: 184 L 184