Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 50.8 bits (120), Expect = 1e-11
 Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 18/142 (12%)

Query: 32  ALDLVQDAMMRLAEKYGDRPAEELPMLFQ-RILQNAIRDYYRRSKVRSMWTTLLSSL--T 88
           A D+ QD   +  + Y DR   E P  F  ++ +N +RD++R+ KVR    +  + +   
Sbjct: 35  AADMTQDVFTQWLD-YRDRAKVEQPRAFLFQMARNLLRDHWRKQKVRHTVHSDQADMDAE 93

Query: 89  PGDDEDSDPLDTLEVEGKAGDSPEGSLEQSQVLAVIEAEISRLPGRQREAFLMRYWEDMD 148
           P  DE +DP+               ++++ Q L  ++  ++ L  R+REA ++  +E + 
Sbjct: 94  PATDEQNDPM--------------AAVQRLQRLEQLKEVLAELSPRRREALMLHRFEGLS 139

Query: 149 VAETAAAMGCSEGSVKTHCSRA 170
            A+ A  MG S   V+ H + A
Sbjct: 140 QAQIAERMGISTSMVEKHIAFA 161