Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 47.0 bits (110), Expect = 2e-10
 Identities = 36/143 (25%), Positives = 65/143 (45%), Gaps = 16/143 (11%)

Query: 28  DEEAALDLVQDAMMRLAEKYGDRPAEELPMLFQRILQNAIRDYYRRSKVRSMWTTLLSSL 87
           D E A D+ QD  +RL         +E      +I +N + D +RR ++   +   L S+
Sbjct: 32  DREHAADVAQDTFLRLLVSGRFPGDKESRSYLAQIARNLVIDQWRRLRIERAY---LESI 88

Query: 88  TPGDDEDSDPLDTLEVEGKAGDSPEGSLEQSQVLAVIEAEISRLPGRQREAFLMRYWEDM 147
               + +S  L+T  +               + L  I+A + R+P   R+AFL+  +E +
Sbjct: 89  AHLPEPESPSLETRALI-------------LETLMQIDAMLDRMPDNVRQAFLLSQFEGL 135

Query: 148 DVAETAAAMGCSEGSVKTHCSRA 170
             A+ A  +G +  SV+ + +RA
Sbjct: 136 SYAQIAERLGVTVSSVQKYMTRA 158