Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 45.4 bits (106), Expect = 6e-10
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 29/148 (19%)

Query: 32  ALDLVQDAMMRLAEK---YGDRPAEELPMLFQRILQNAIRDYYRRSKVRSMWTTLLSS-- 86
           A +L QD  +RL  K   + D   E       R+ +NA  D++RR +V   +  +L++  
Sbjct: 39  AAELAQDVFVRLLSKPRVFNDH--EHARAYLGRMSRNACVDFWRRRRVEQAYLEVLAAQP 96

Query: 87  --LTPGDDEDSDPLDTLEVEGKAGDSPEGSLEQSQVLAVIEAEISRLPGRQREAFLMRYW 144
             L P  +  +  L+TLE                     ++A   R+P R  EAF M   
Sbjct: 97  EQLAPSLEHQAVILETLEQ--------------------LQAMFERMPQRVAEAFSMAQL 136

Query: 145 EDMDVAETAAAMGCSEGSVKTHCSRATH 172
           + M   E A  +G SE SV ++ ++A +
Sbjct: 137 QGMKQREIAEQLGVSERSVNSYLAQAMY 164