Pairwise Alignments

Query, 185 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24 from Dechlorosoma suillum PS

Subject, 177 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

 Score = 46.2 bits (108), Expect = 3e-10
 Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 15/154 (9%)

Query: 26  VRDEEAALDLVQDAMMRLAEKYGDRPAEELPMLF-QRILQNAIRDYYRRSKVRSMWTTLL 84
           V +   A DLVQ+ ++R             P+ +   I  NA+RD++RR   R       
Sbjct: 15  VGNAHLAEDLVQETLLRAVAAQQAFAGRSRPLTWLSAIALNALRDHFRRPATRR------ 68

Query: 85  SSLTPGDDEDSDPLDTLEVEGKAGDSPEGSLEQSQVLAVIEAEISRLPGRQREAFLMRYW 144
                  +E + P D   +  +  D+   +L ++++   I A +S LP R RE  ++   
Sbjct: 69  -------EESAAPEDFAGLADQCEDAVT-ALMKAEMGDCITAHLSALPDRLREVLVLHDM 120

Query: 145 EDMDVAETAAAMGCSEGSVKTHCSRATHTLAAAL 178
                AE AAA+G +EG+ +    RA   L   L
Sbjct: 121 GGAGHAEVAAALGITEGNARVLLHRARAALRERL 154