Pairwise Alignments

Query, 332 a.a., tripartite ATP-independent periplasmic transporter solute receptor, DctP family from Dechlorosoma suillum PS

Subject, 345 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

 Score =  155 bits (391), Expect = 2e-42
 Identities = 111/335 (33%), Positives = 165/335 (49%), Gaps = 17/335 (5%)

Query: 1   MKMSHLMFGLLA-----GVLSCGAMAQQPIV--IKFSHVVAVDTPKGMAADFFAKKAAEL 53
           MK    + GL A     G+ S GAMAQ       K S V+   TP G A   +A    E 
Sbjct: 1   MKFRRTLLGLAAAATALGMFSTGAMAQAAYKPEYKMSLVLGPPTPWGQAGKIWADMVKER 60

Query: 54  TKGKVKVEVYPNSQLYKDKE--EMEALQLGAVQMLAPSLAKFGPLGVREFEAFDLPYIFD 111
           T+G++ +++YP   L +  +  E  AL+ G + M   S   + P  V++   F +P++  
Sbjct: 61  TQGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSPQ-VKQLNLFSMPFLMP 119

Query: 112 NYEELHKVTTGPVGAALLAKLEPKGIKGLAYWDNGFKSFS-ANTPIKTPADLKGKKMRIQ 170
           +Y  +  +T G VG  +   LE  G+  LA+ +NGF+  + +  PIK+PAD+KG K+R+ 
Sbjct: 120 DYAAIDALTQGEVGKEMFKTLEKAGVVPLAWGENGFREITNSKKPIKSPADIKGMKIRVV 179

Query: 171 SSKVLEEEMRSLGALPQVMAFSEVYQALQTGVVDGTENPISNLYTQKMHEV-QKHLTLTD 229
            S +  +   +LGA P  M++++   AL +G VDG ENP+      KM  V QK +T   
Sbjct: 180 GSPIYSDMFTALGANPTQMSWADAQPALASGAVDGQENPLFLFTVLKMQTVGQKFVTTWG 239

Query: 230 HGYLGYAVIVNKKFW-DGLPAD---VRGQLETAMKDATTYANKIAKEQNDKDLESVKKSG 285
           +       +VNK+ W    PAD   VR     A K+    A K   E +   L+ +   G
Sbjct: 240 YVADPLVFVVNKEIWASWTPADQAIVRQAAIDAGKEEIVLARKGLVETDKPVLKDIAGMG 299

Query: 286 KTQVYVPTKEEREAFKKALTPVHAKMADRIGKDLI 320
            T V   T  ERE F KA  PV+ K    +G DL+
Sbjct: 300 VT-VTSLTPAEREEFVKATRPVYDKWKSTVGTDLV 333