Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 497 a.a., Transcription termination protein NusA from Variovorax sp. SCN45

 Score =  624 bits (1609), Expect = 0.0
 Identities = 326/493 (66%), Positives = 393/493 (79%), Gaps = 4/493 (0%)

Query: 1   MSREILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFR 60
           M+RE+L+LVDA++REKNV +DVVFGA+ESALA ATKK    + D+RV +DR++G+YE+FR
Sbjct: 1   MNREMLMLVDAISREKNVERDVVFGAVESALAQATKKLHQGDVDIRVSVDRDSGDYETFR 60

Query: 61  RWQVVADETYVN-EFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQR 119
           RW VV DE  +     E+ L EA+++   +EVG+ IEE++E +  GRIGA AAKQVILQ+
Sbjct: 61  RWHVVPDEAGLQLPDQEILLFEAKEEMSDIEVGEYIEEAVESVPIGRIGAMAAKQVILQK 120

Query: 120 IRDAEREQILADFLERKEHIVSGTIKRMERGNAIIEAGKIEALLPRDQMIPKENLRVGDR 179
           IRDAERE +L DF+ R + I  GT+KR+++G+ I+EAG++E  L R +MI KENLR GDR
Sbjct: 121 IRDAEREMLLNDFMSRGDKIFVGTVKRLDKGDIIVEAGRVEGRLRRSEMIAKENLRNGDR 180

Query: 180 VKAFLLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAV 239
           V+A ++ +D   RG  IILSR+APEF+I+LF  EVPEIE GL+EIK+ ARDPG RAKIAV
Sbjct: 181 VRAMIMEVDLTLRGAPIILSRSAPEFMIELFRQEVPEIEQGLLEIKSCARDPGSRAKIAV 240

Query: 240 KSNDPRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVV 299
            S+D RVDPIGTCVG+RGTRV AVTNELAGERVDIV WS+DPAQFVIGALAPA VSSIVV
Sbjct: 241 LSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVV 300

Query: 300 DEEKHSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVL 359
           DEEKH+MDVVVDE NLAIAIGRGGQNVRLAS+LTGW IN+M   ES +K   ET A+R L
Sbjct: 301 DEEKHAMDVVVDEENLAIAIGRGGQNVRLASDLTGWKINIMDANESAQKQATETDASRKL 360

Query: 360 FMEKLDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVLLTEA 419
           FMEKLDVDEE+A+ILI EGF++LEEVAYVP++EMLEIEAFDEDT+NELR+RA++ LLT  
Sbjct: 361 FMEKLDVDEEIADILISEGFNSLEEVAYVPISEMLEIEAFDEDTINELRSRAKDALLTME 420

Query: 420 IVTEEQLEG---VEDSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDELTEITGIDADR 476
           I  EE +EG   V   L  L+G+D  L  KL   GV T DDLADLAVDELTEITG  AD 
Sbjct: 421 IAKEEGVEGAPQVSQDLHDLEGLDPELIPKLVEAGVNTRDDLADLAVDELTEITGHSADD 480

Query: 477 AKQLITNARSHWF 489
           AK LI  AR HWF
Sbjct: 481 AKALILKAREHWF 493