Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC101

 Score =  491 bits (1264), Expect = e-143
 Identities = 253/493 (51%), Positives = 356/493 (72%), Gaps = 6/493 (1%)

Query: 1   MSREILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFR 60
           M++EIL +V+A++ EK + ++ +F ALESALA+ATKK+   E DVRV IDR +G++++FR
Sbjct: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60

Query: 61  RWQVVADETYVNEFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRI 120
           RW VV + T   +  E+ L  A+ +DE + +GD +E+ +E + F RI  Q AKQVI+Q++
Sbjct: 61  RWLVVDEVTQPTK--EITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKV 118

Query: 121 RDAEREQILADFLERKEHIVSGTIKRMERGNAIIEAGK-IEALLPRDQMIPKENLRVGDR 179
           R+AER  ++  F E +  I++G +K++ R N  ++ G   EA++ R+ M+P+EN R GDR
Sbjct: 119 REAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDR 178

Query: 180 VKAFLLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAV 239
           V+  L  +   ARG Q+ ++R+ PE +I+LF +EVPEI + ++EIKAAARDPG RAKIAV
Sbjct: 179 VRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238

Query: 240 KSNDPRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVV 299
           K+ND R+DP+G CVGMRG RV AV+ EL GER+DIV W  +PAQFVI A+APA+V+SIVV
Sbjct: 239 KTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298

Query: 300 DEEKHSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVL 359
           DE+KH+MD+ V+  NLA AIGR GQNVRLAS+L+GW +N+MT ++ + K +AE  A    
Sbjct: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDT 358

Query: 360 FMEKLDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVLLTEA 419
           F + LD+DE+ A +L++EGFSTLEE+AYVP+ E+LEIE  DE TV  LR RA+N L T A
Sbjct: 359 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIA 418

Query: 420 IVTEEQL--EGVEDSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDELTEITGIDADRA 477
            V EE L      D LL L+G+D+ LA KLA+ GV TL+DLA+  +D+L +I G+  ++A
Sbjct: 419 QVQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKA 478

Query: 478 KQLITNARS-HWF 489
             LI  AR+  WF
Sbjct: 479 GALIMAARNICWF 491