Pairwise Alignments

Query, 490 a.a., transcription termination factor NusA from Dechlorosoma suillum PS

Subject, 496 a.a., transcription termination/antitermination protein NusA from Dickeya dianthicola 67-19

 Score =  477 bits (1228), Expect = e-139
 Identities = 246/493 (49%), Positives = 353/493 (71%), Gaps = 6/493 (1%)

Query: 1   MSREILLLVDALAREKNVAKDVVFGALESALASATKKRINDEADVRVVIDRNTGEYESFR 60
           M++EIL +V+A++ EK V ++ +F ALE+ALA+ATKK+   E DVRV IDR TG++++FR
Sbjct: 1   MNKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFR 60

Query: 61  RWQVVADETYVNEFLEMPLSEAQKQDEGVEVGDVIEESLEPIDFGRIGAQAAKQVILQRI 120
           RW VV + T      E+ L  AQ ++  +++G  IE+ +E + F RI  Q AKQVI+Q++
Sbjct: 61  RWLVVNEVTQPTR--EITLEAAQFEEPSMDLGGYIEDQIESVTFDRITTQTAKQVIVQKV 118

Query: 121 RDAEREQILADFLERKEHIVSGTIKRMERGNAIIEAGK-IEALLPRDQMIPKENLRVGDR 179
           R+AER  ++  F E++  IV+G +K++ R N  ++ G   EA++ R+ M+P+EN R GDR
Sbjct: 119 REAERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDR 178

Query: 180 VKAFLLRIDRNARGPQIILSRTAPEFIIKLFDLEVPEIEDGLMEIKAAARDPGMRAKIAV 239
           ++  L  +   ARG Q+ +SR+ PE +I+LF +EVPEI + ++EIKAAARDPG RAKIAV
Sbjct: 179 IRGVLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238

Query: 240 KSNDPRVDPIGTCVGMRGTRVTAVTNELAGERVDIVHWSQDPAQFVIGALAPAEVSSIVV 299
           K+ND R+DP+G CVGMRG RV AV++EL GER+DIV W  +PAQFVI A+APA+V+SIVV
Sbjct: 239 KTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298

Query: 300 DEEKHSMDVVVDEANLAIAIGRGGQNVRLASELTGWNINLMTQEESEKKVEAETAATRVL 359
           DE+KH+MD+ V+  NLA AIGR GQNVRLAS+L+GW +N+MT E+ + K +AE  A   +
Sbjct: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDI 358

Query: 360 FMEKLDVDEEVANILIDEGFSTLEEVAYVPLAEMLEIEAFDEDTVNELRNRARNVLLTEA 419
           F + L +DEE A  L++EGFS+LEE+AYVP+ E+ +I+  DE+T+  LR RA+  L T A
Sbjct: 359 FTKHLGIDEEFATALVEEGFSSLEELAYVPIHELQDIDGLDEETIEALRERAKAALTTLA 418

Query: 420 IVTEEQLEGVE--DSLLALDGMDKSLAAKLASGGVKTLDDLADLAVDELTEITGIDADRA 477
           +  EE     +  + LL L G+ + LA KLA+ GV TL+DLA+  VD+L +I G+  ++A
Sbjct: 419 LANEENRGSGQPAEDLLNLSGLSRELAFKLAACGVCTLEDLAEQGVDDLADIEGLGEEQA 478

Query: 478 KQLITNARS-HWF 489
            +LI  AR+  WF
Sbjct: 479 GELIMAARNICWF 491