Pairwise Alignments

Query, 300 a.a., tRNA pseudouridine 55 synthase from Dechlorosoma suillum PS

Subject, 315 a.a., tRNA pseudouridine 55 synthase from Agrobacterium fabrum C58

 Score =  202 bits (515), Expect = 6e-57
 Identities = 123/315 (39%), Positives = 172/315 (54%), Gaps = 24/315 (7%)

Query: 1   MSKPRRTW------KQVDGVLLLDKPLHLSSNDALQKARRFFSAAKAGHTGTLDPLATGL 54
           MSKPR+        + + G L+LDKPL   S +A+ K +  F+A KAGH GTLDPLA+G+
Sbjct: 1   MSKPRKQQHRKPKGRPISGWLILDKPLDFGSTEAVSKIKWLFNAQKAGHAGTLDPLASGM 60

Query: 55  LPICFGEATKFSADLLDADKAYVADVRLGQTTATGDAEGEILQTRPVQVSAEQLAAVLPR 114
           LPI  G+ATK    ++D  K Y   V  G+  AT D EGE++++   +   + +  +LP 
Sbjct: 61  LPIALGDATKTVPYVMDGRKIYEFTVTWGEQRATDDLEGEVVESSDQRPEEQAIRDILPN 120

Query: 115 FTGVIAQVPPMYSALKRDGKPLYELARQGLEVEREAREVTI---LSLAASDFDGVNFRLH 171
           +TGVI Q PP +SA+K  G+  Y+LAR G  VE  AREV I     LA  D D  +F   
Sbjct: 121 YTGVIMQTPPQFSAIKIAGERAYDLARDGETVEIPAREVEIHRLTLLACPDADTAHF--E 178

Query: 172 VDCSKGTYIRTLAEDIGEALGCGAHLTGLRRTRVGPLELDRAV---SLAELENTEEADR- 227
           V+C KGTY+R LA D+G  LGC  H++ LRRT V P   D  V   +L  LE  E+ D  
Sbjct: 179 VECGKGTYVRALARDMGRDLGCFGHISELRRTMVAPFGEDMMVPLETLTALEAIEDRDER 238

Query: 228 ----GRYLLPVDALLRSLPEVLLEAESLQRFAHGNPVATELQSG-----KARVYGEGVLQ 278
                 +L+     L SLP +++  +   R   GNP+    +       +A    +G L 
Sbjct: 239 LEALDAFLIDTAEALSSLPRLIINDDQAHRLKMGNPILLRGRDAPANHPEAYATAQGKLV 298

Query: 279 GVGEVREGKLWPYRL 293
            +GE+ EG+  P R+
Sbjct: 299 AIGEIGEGEFRPKRV 313