Pairwise Alignments

Query, 639 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  406 bits (1043), Expect = e-117
 Identities = 238/575 (41%), Positives = 333/575 (57%), Gaps = 25/575 (4%)

Query: 70   REIVILRRAARAYELA---MEGAHDGMWTWNPLSKELTAGQRLHAILGYGENFLMDTHAW 126
            R+I   RRA +   +A    E +   +   +P    + A +    + GY  + ++D    
Sbjct: 703  RDISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPG 762

Query: 127  LTLVHPEDTARYNRAVSE-HLKGLTPHFYCEYRVRAKSGEY--RWIASRGIAVRDARGVA 183
            +  V  +        V + H +G    +  E  ++ + G++   W+     AV D  G  
Sbjct: 763  MLTVDEQQEGHLRYVVKQLHQRG---SWEGEVWLKRRDGDHYPAWVGIT--AVLDDEGDL 817

Query: 184  TLMAGSVTDITERKLHEERMRYLAHHDQLTGLPNRLLLADRLPQALTRAKRQQSRAAVLF 243
                   TDI+ERK  E+R+  LA++D LT LPNR L  DRL  AL +A+RQ++   ++F
Sbjct: 818  ASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMF 877

Query: 244  VDLDRFKNINDSLGHNQGDRLLQSVARRLQECLRQSDTIVRQGGDEFIVILEDLQLPE-- 301
            +DLDRFK INDSLGH  GDR+L+ +A RL  C+   DT+ R GGDEF ++L+     E  
Sbjct: 878  LDLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMA 937

Query: 302  --QAGQIGAKLLETLASPYREDGYDFFLTASIGIALYPDDGDDADTLLRNADTAMYEGKS 359
              +A  +   +L +L  P+  +  +FF+TASIGIAL P DG +   L++NADTAMY  K 
Sbjct: 938  LNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKE 997

Query: 360  SGGNTVRFYTGRMNERLQSRVSLENGLRRALERDELQLYYQPQIDLASGRLLGAEALLRW 419
             G N  +FY   MN     R+ LE+ LR A+E++E  LYYQPQ      RL GAEALLRW
Sbjct: 998  RGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRW 1057

Query: 420  NDGGR-LIPPDQFIPVAEETGLIVPIGLWVLDTAIARAAAWRRHWQLRQGMGATPPRIAI 478
                R L+PP  FIPV EE GL+V +G WVL  A  +  AW +            P++++
Sbjct: 1058 RHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHK-------AKVRVPKVSV 1110

Query: 479  NLSARQFWGGGIAEHVLLRLEREGLPPSTIELEVTESVLLRQEADCLEELRRLREAGVGL 538
            N+SARQF  G +   +   LE  GLPP+ +ELE+TES+L+R+  + L+ L  L+  G+ +
Sbjct: 1111 NISARQFSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSI 1170

Query: 539  ALDDFGTGYSSLSYLRLLPIDTLKIDKSFIFPLDEDQDGEAAAIVRAILAMAHTLGHKVV 598
            A+DDFGTGYSSL+YL+  PID LKID++F+  L E +  + A I RAI+AMAH+L   V+
Sbjct: 1171 AVDDFGTGYSSLNYLKQFPIDVLKIDRTFVDGLPEGE--QDAQIARAIIAMAHSLNLAVI 1228

Query: 599  AEGVERQTQLELLRTMGCDSFQGYLESRPLPPEAF 633
            AEGVE   QLE LR  GCD  QGYL  RP+P   F
Sbjct: 1229 AEGVETHEQLEFLREHGCDEVQGYLFGRPMPAHQF 1263



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 98  PLSKELTAGQRLHAILGYGENFL--MDTHAWLTLVHPEDTARYNRAVSEHLKGLTPH-FY 154
           P  + + + + L   LGY    L  M    W  L+HPED A Y     +          +
Sbjct: 466 PSQRMIFSNRHLGQTLGYDRTELAQMGDRFWELLLHPEDAAHYQALRRQQRDNCHDQPLH 525

Query: 155 CEYRVRAKSGEYRWIASR-GIAVRDARGVATLMAGSVTDIT-----ERKLHEERMRY 205
           C+ R R + G +R    R  +  R+A G+ T + G   D+T      + L +   RY
Sbjct: 526 CQLRFRHRDGSWRCYDIREQVLTRNAEGLVTRIIGVGKDVTVQIEASQSLRDSEQRY 582