Pairwise Alignments

Query, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

Subject, 1143 a.a., transcription-repair coupling factor from Ralstonia solanacearum PSI07

 Score = 1508 bits (3904), Expect = 0.0
 Identities = 760/1142 (66%), Positives = 899/1142 (78%), Gaps = 4/1142 (0%)

Query: 57   EISRALAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEE 116
            ++S +   + + G+R     L GSADAL LAR   Q R    +LAV+ A+  DAQRL EE
Sbjct: 3    DLSLSALPIVKPGQRFVFSGLQGSADALLLARYLEQHRGTVPMLAVVCANAVDAQRLAEE 62

Query: 117  IPWFAPDLKVRLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRL 176
            + WFAP  +V+LLPDWETLPYDNFSPH DL+SERLATL+ +  G C++LLVPA+TA+ R+
Sbjct: 63   LRWFAPQARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDILLVPASTALQRI 122

Query: 177  TPPSYLAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSA 236
             PPS+LAAYTFF KKGE+LD    ++Q TLAGY HV+ V+ PGEYS+RGGL+DLFPMGS 
Sbjct: 123  APPSFLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSP 182

Query: 237  LPYRIDLFDEEIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEG 296
            +PYR+DLF +EI+T+R FD DTQRSLYPV E+RLLP REFP+D+  RT FR R+REVFEG
Sbjct: 183  MPYRLDLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRWREVFEG 242

Query: 297  DPAKSGIYKDVSNGVPSAGIEYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRD 356
            DP ++ IYKD+ NGVPSAGIEY+LPLFFE TATLFDYLP    L    D+  A++ FW D
Sbjct: 243  DPTRAPIYKDIGNGVPSAGIEYYLPLFFETTATLFDYLPAGVHLALVGDIEGAVRRFWAD 302

Query: 357  TQSRYNMLAGDKARPLLPPAELFLSEEQFFVAAKDYAKLILGTPAEGMPPLATAVPTVAV 416
            T  RYN +  D+ RPLL P+ L+L EE FF+AAK +A+L+L     G  PL+  +P VAV
Sbjct: 303  TTQRYNFMRHDRDRPLLAPSALYLDEEAFFIAAKPHARLVLRAEP-GDAPLSLPLPNVAV 361

Query: 417  ERRAEDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGD 476
             RRAEDPL  L+ F+      R ++ AESAGRRETL Q+L   GL P    D A  +GGD
Sbjct: 362  NRRAEDPLVNLESFLM-HGNYRVMICAESAGRRETLAQMLAASGLHPEGVTDCADLVGGD 420

Query: 477  APLALGVAPLQSGFCL--DGLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTELKV 534
            A   LGVAPL  GF L  + +A ITETELYA +  R  R+  ++ +++D  +RDL ELK+
Sbjct: 421  ARFVLGVAPLYQGFILGDERIAFITETELYAQAVRRGGRRKQEQASAVDAMVRDLAELKI 480

Query: 535  GDPVVHESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDA 594
            GDPVVH  HGIGRY GL+ +D+G G+ EFL L Y   +KLYVPV QLHVISRYSG +PD 
Sbjct: 481  GDPVVHSEHGIGRYQGLVSIDMGHGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDT 540

Query: 595  APLHSLGSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGF 654
            APLH LGSGQWEKAK++AA+Q RDTAAELL LYA RA RQG AF  T NDYEAFA+ FGF
Sbjct: 541  APLHQLGSGQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGF 600

Query: 655  EETEDQATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTT 714
            +ET DQA AIAAVI DM SGKPMDRLVCGDVGFGKTEVALRAAFVAV GGKQVA+L PTT
Sbjct: 601  DETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTT 660

Query: 715  LLCEQHYQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMK 774
            LL EQHYQT  DRFADWPV+IAE+SRFK  KE   A++ + AG IDIVIGTHKLLS ++K
Sbjct: 661  LLAEQHYQTLADRFADWPVRIAEISRFKNKKEIDAAVEAINAGTIDIVIGTHKLLSPDVK 720

Query: 775  FDRLGLVMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATA 834
            FDRLGLV+IDEEHRFGVRQKEALK LRAEVDVLTLTATPIPRTL M+LEGLRDFSVIATA
Sbjct: 721  FDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATA 780

Query: 835  PQKRLAIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIV 894
            PQKRLAIKTFV +  DG++REA+LRELKRGGQVYFLHNEV+TI+N R KL++LVPEAR+ 
Sbjct: 781  PQKRLAIKTFVRREEDGVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPEARVA 840

Query: 895  VGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQL 954
            V HGQM+ERELERVMRDF  QRAN+LLCTTIIETGID P ANTILI+R++KFGLAQLHQL
Sbjct: 841  VAHGQMHERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRSDKFGLAQLHQL 900

Query: 955  RGRVGRSHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVL 1014
            RGRVGRSHHQAY+YLLV D   LTKQA++RLEAIQ MEELG+GFYLAMHDLEIRGAGEVL
Sbjct: 901  RGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVL 960

Query: 1015 GENQSGEMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPD 1074
            G+ QSGE+ E+GF LYT+MLN+AV +LK G+EPDL  PL  TTEINL  PALLP  Y  D
Sbjct: 961  GDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPSDYCGD 1020

Query: 1075 VHERLTLYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLD 1134
            V ERL+LYKRL+NCE+ E I+ +QEELIDRFG+LPPQ Q L+ THRLR+ A+PLGI K+D
Sbjct: 1021 VQERLSLYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAQPLGIRKID 1080

Query: 1135 ATASQLTVQFCPNPPIEPIRIIELIQKNRHFKLAGQDKLAVVRHMPTLKERVDAVKDLFR 1194
             +A  +T+QF PNPP++ I+II+L+QKNR  KLAGQD+L +            A++   R
Sbjct: 1081 TSADAVTLQFVPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPAETAALAQAIRHTMR 1140

Query: 1195 QL 1196
            QL
Sbjct: 1141 QL 1142