Pairwise Alignments

Query, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score = 1140 bits (2948), Expect = 0.0
 Identities = 607/1130 (53%), Positives = 784/1130 (69%), Gaps = 16/1130 (1%)

Query: 77   LAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFAPDLKVRLLPDWETLP 136
            L G+A +LA+A   S A    R   +LTA    A RL +E+ +FAPDL V   PDWETLP
Sbjct: 21   LPGAALSLAIAEAASSAG---RFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLP 77

Query: 137  YDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSYLAAYTFFLKKGEKLD 196
            YD FSPH D++S+R+A+LY +      +L+VP TTA++RL P  +L   +  L  G+ +D
Sbjct: 78   YDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSLVLDVGQTID 137

Query: 197  AEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRIDLFDEEIETLRTFDA 256
             EQ R +L  +GY  V  V   GE+++RG L+DLFPMGS LPYRIDLFD EIETLRTFD 
Sbjct: 138  VEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFDP 197

Query: 257  DTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKSGIYKDVSNGVPSAGI 316
            +TQRS+  V  +RLLPAREFP+     TRF+ RFRE F+ D  +S I++D+++G+  AGI
Sbjct: 198  ETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIPAGI 257

Query: 317  EYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSRYNMLAGDKARPLLPPA 376
            EY+LPLFFEET+TLFDYLP D  +     V  A + FW D + RY    GD +RPLLPPA
Sbjct: 258  EYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLSRPLLPPA 317

Query: 377  ELFLSEEQFFVAAKDYAKLIL-------GTPAEGMPPLATAVPTVAVERRAEDPLTALKQ 429
            ELFL  E  F   K + ++++       G   E  P  A A+P +A+E +A  PL  L  
Sbjct: 318  ELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFP--ARALPNLAIEAKANQPLAELAN 375

Query: 430  FIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGDAPLALGVAPLQSG 489
            F+    GR  L  AESAGRRE L +LL    L+P     +  F+ G   LA+ +APL  G
Sbjct: 376  FLDQFPGR-VLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITIAPLDDG 434

Query: 490  FCLD--GLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTELKVGDPVVHESHGIGR 547
              LD  GLA+I E+ L+     +R R++ +   + D  +++LTEL+ G PVVH  HG+GR
Sbjct: 435  LLLDDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDHGVGR 494

Query: 548  YMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDAAPLHSLGSGQWEK 607
            Y+GL  L++     EFL L YA  AKLYVPV+ LH+I+RY+G++   APLH LGS  W+K
Sbjct: 495  YLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSEAWQK 554

Query: 608  AKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGFEETEDQATAIAAV 667
            AK+KAAEQ RD AAELL +YA RAAR+G+AFA    DY  F+ GF FEET DQ  AI AV
Sbjct: 555  AKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAV 614

Query: 668  IEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTTLLCEQHYQTFKDR 727
              DM + KPMDRLVCGDVGFGKTEVA+RAAF+AV  G+QVAVL PTTLL +QHY +F+DR
Sbjct: 615  RADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDR 674

Query: 728  FADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMKFDRLGLVMIDEEH 787
            FADWPV +  +SRFK+AKE A A  DL  GKIDI+IGTHKLL  +++F  LGL +IDEEH
Sbjct: 675  FADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEEH 734

Query: 788  RFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQKRLAIKTFVAK 847
            RFGVRQKE LKALR+EVD+LTLTATPIPRTL M++ G+RD S+IAT P +RL+++TFV +
Sbjct: 735  RFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVME 794

Query: 848  FSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIVVGHGQMNERELER 907
             +   ++EA+LREL RGGQVY+LHN+V TI+     L  LVPEARI +GHGQM ERELE+
Sbjct: 795  QNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQ 854

Query: 908  VMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQLRGRVGRSHHQAYS 967
            VM DF  +R N+L+ +TIIETGID P ANTI+I RA+KFGLAQLHQLRGRVGRSHHQAY+
Sbjct: 855  VMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYA 914

Query: 968  YLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVLGENQSGEMQEVGF 1027
            YLL    + ++  A++RLEAI + ++LGAGF LA +DLEIRGAGE+LGE QSG++Q VGF
Sbjct: 915  YLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQAVGF 974

Query: 1028 NLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPDVHERLTLYKRLSN 1087
             LY EML RAV A+++G +P+L QPLG   EINL  PAL+P+ Y PDVH RL LYKR+++
Sbjct: 975  TLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILYKRIAS 1034

Query: 1088 CETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLDATASQLTVQFCPN 1147
               EE +  LQ E+IDRFG LP   + L+    L+L A  LGI K+DA  +   ++F   
Sbjct: 1035 AADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLEFEAE 1094

Query: 1148 PPIEPIRIIELIQ-KNRHFKLAGQDKLAVVRHMPTLKERVDAVKDLFRQL 1196
             P++P+ +I+LIQ + + +K  G  +   +  M    ER + ++ LF +L
Sbjct: 1095 TPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERL 1144