Pairwise Alignments

Query, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas sp. SVBP6

 Score = 1155 bits (2988), Expect = 0.0
 Identities = 612/1145 (53%), Positives = 801/1145 (69%), Gaps = 16/1145 (1%)

Query: 62   LAQLPRSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFA 121
            L  LP +  +     L G+A +LA+A   S A   KR   +LTA    A RL +E+ +FA
Sbjct: 6    LPHLPATAGKQTWGNLPGAALSLAIAEAASAA---KRFTLLLTADSQSADRLEQELRFFA 62

Query: 122  PDLKVRLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSY 181
            P+L V   PDWETLPYD FSPH D++S+R+++LY +   +  +L+VP TTA++RL P  +
Sbjct: 63   PELPVLPFPDWETLPYDLFSPHQDIISQRISSLYRLPELDHGILVVPITTALHRLAPTRF 122

Query: 182  LAAYTFFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRI 241
            L   +  L  G+KLD EQ R++L  +GY  V  V   GE+++RG L+DLFPMGS LPYRI
Sbjct: 123  LLGSSLVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRI 182

Query: 242  DLFDEEIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKS 301
            DLFD+EIETLRTFD +TQRS+  V  +RLLPAREFPL     TRF+ RFRE F+ D  +S
Sbjct: 183  DLFDDEIETLRTFDPETQRSIDKVDSVRLLPAREFPLQKEAVTRFKARFRERFDVDFRRS 242

Query: 302  GIYKDVSNGVPSAGIEYWLPLFFEETATLFDYLPKDAVLCQHRDVALALQDFWRDTQSRY 361
             I++D+S+G+  AGIEY+LPLFFE+T+TLFDYLP+D  +     V  A + FW D ++RY
Sbjct: 243  PIFQDLSSGITPAGIEYYLPLFFEDTSTLFDYLPQDTQVFSLPGVEQAAEHFWSDVRNRY 302

Query: 362  NMLAGDKARPLLPPAELFLSEEQFFVAAKDYAKLIL-------GTPAEGMPPLATAVPTV 414
                 D ARPLLPPAELFL  E  F   K + ++++       G   E  P  A  +P +
Sbjct: 303  EERRIDPARPLLPPAELFLPVEDCFARLKSWPRVVVSQDDVDSGVGRERFP--AQVLPNL 360

Query: 415  AVERRAEDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLG 474
            A+E +A  PL AL  F+    GR  L  AESAGRRE L +LL    L+P     ++AF+ 
Sbjct: 361  AIEAKANQPLAALSGFLEQFSGR-VLFTAESAGRREVLLELLERLKLRPQTVDSWSAFVA 419

Query: 475  GDAPLALGVAPLQSGFCLD--GLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTEL 532
            G   LA+ +APL  G  LD   +A++ E+ L+     +R R++ +  A+ D  +++LTEL
Sbjct: 420  GKERLAITIAPLDEGLLLDDPAIALVAESPLFGQRVMQRRRRDKRSDANNDAVIKNLTEL 479

Query: 533  KVGDPVVHESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEP 592
            + G PVVH  HG+GRY+GL  L++     EFL L YA  AKLYVPV+ LH+I+RY+G++ 
Sbjct: 480  REGAPVVHIDHGVGRYLGLATLEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDD 539

Query: 593  DAAPLHSLGSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGF 652
              APLH LGS  W+KAK+KAAEQ RD AAELL +YA RAAR+G+AFA    DY  F+ GF
Sbjct: 540  ALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSVDYATFSAGF 599

Query: 653  GFEETEDQATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCP 712
             FEET DQ +AI AV EDM + KPMDRLVCGDVGFGKTEVA+RAAF+AV GG+QVA+L P
Sbjct: 600  PFEETPDQQSAIEAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGRQVAILVP 659

Query: 713  TTLLCEQHYQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKE 772
            TTLL +QHY +F+DRFADWPV +  +SRFK+ KE A A+ DL  GKIDIVIGTHKLL  +
Sbjct: 660  TTLLAQQHYNSFRDRFADWPVTVEVMSRFKSPKEVAAAVADLAEGKIDIVIGTHKLLQDD 719

Query: 773  MKFDRLGLVMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIA 832
            +K   LGLV+IDEEHRFGVRQKE LKALR+EVD+LTLTATPIPRTL M++ G+RD S+IA
Sbjct: 720  VKIKDLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIA 779

Query: 833  TAPQKRLAIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEAR 892
            T P +RL+++TFV + +   ++EA+LREL RGGQVY+LHN+V +I+     L  LVPEAR
Sbjct: 780  TPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKSIEKCAADLAELVPEAR 839

Query: 893  IVVGHGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLH 952
            I +GHGQM ERELE+VM DF  +R N+L+ +TIIETGID P ANTI+I RA+KFGLAQLH
Sbjct: 840  IGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLH 899

Query: 953  QLRGRVGRSHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGE 1012
            QLRGRVGRSHHQAY+YLL    + +T  A++RLEAI + ++LGAGF LA +DLEIRGAGE
Sbjct: 900  QLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGE 959

Query: 1013 VLGENQSGEMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYA 1072
            +LGE QSG++Q VGF LY EML RAV A+++G +P+L QPLG   EINL  PAL+P+ Y 
Sbjct: 960  LLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLDQPLGGGPEINLRLPALIPEDYL 1019

Query: 1073 PDVHERLTLYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVK 1132
            PDVH RL LYKR+++   E+ +  LQ E+IDRFG LP   + L+    L+L A  LGI K
Sbjct: 1020 PDVHARLILYKRIASAVDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEKLGIKK 1079

Query: 1133 LDATASQLTVQFCPNPPIEPIRIIELIQ-KNRHFKLAGQDKLAVVRHMPTLKERVDAVKD 1191
            +DA  +   ++F    P++P+ +I+LIQ + + +K  G  +   +  M   +ER + ++ 
Sbjct: 1080 VDAGPNGGKIEFEAQTPVDPLVLIKLIQGQPKRYKFEGATQFKFLVPMERPEERFNNLEA 1139

Query: 1192 LFRQL 1196
            LF +L
Sbjct: 1140 LFERL 1144