Pairwise Alignments

Query, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

 Score = 1037 bits (2681), Expect = 0.0
 Identities = 561/1139 (49%), Positives = 748/1139 (65%), Gaps = 17/1139 (1%)

Query: 67   RSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFAPDLKV 126
            ++G++  L  L G+A A  +A +  +      L+A       +A RL +EI  F   L V
Sbjct: 12   KAGDQRQLGELTGAACATLVAEIAERHPGPVILVA---PDMQNALRLHDEIRQFTDSL-V 67

Query: 127  RLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSYLAAYT 186
              L DWETLPYD+FSPH +++S RL+TLY +   +  VL+VP  T + R+ P SYL  + 
Sbjct: 68   FSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSYLHGHA 127

Query: 187  FFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRIDLFDE 246
              +KKG++L  +  R+QL  AGY HV QV+  GEY+ RG L+DL+PMGS  PYR+D FD+
Sbjct: 128  LVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDD 187

Query: 247  EIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKSGIYKD 306
            EI++LR FDADTQR+L  V  I LLPA EFP D      FR ++R+ FE       IY+ 
Sbjct: 188  EIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQ 247

Query: 307  VSNGVPSAGIEYWLPLFFEETA-TLFDYLPKDAVLCQHRDVALALQDFWRDTQSRYNMLA 365
            VS G   AGIEYW PLFF E    LF Y P + ++    D+  +   F  +T++R+    
Sbjct: 248  VSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETRARFENRG 307

Query: 366  GDKARPLLPPAELFLSEEQFFVAAKDYAKLILGTPAEGMPPLAT-----AVPTVAVERRA 420
             D  RPLLPP  L+L  ++     K + ++ L T +       T      +P +AV+ + 
Sbjct: 308  VDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPDLAVQAQQ 367

Query: 421  EDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGDAPLA 480
            + PL  L++F+    G   +   ES GRRE L +LL    + P      +   G    L 
Sbjct: 368  KSPLDNLRKFLESFTGP-VVFSVESEGRREALGELLGRIKVAPKRILRLSEATGNGRYLM 426

Query: 481  LGVAPLQSGFC--LDGLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTELKVGDPV 538
            +G A  + GF   L+ LA+I E++L  G    R RQ+++R  + D  +R+L EL  G P+
Sbjct: 427  IGAA--EHGFIDTLNNLALICESDLL-GERVARRRQDSRRTINPDTLIRNLAELHPGQPI 483

Query: 539  VHESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDAAPLH 598
            VH  HG+GRY G+  L+ G    E+L L YAN+AKLYVPVS LH+ISRY+G   + APLH
Sbjct: 484  VHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543

Query: 599  SLGSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGFEETE 658
             LG   W +A++KAAE+ RD AAELL +YA RAA+QG AF   +  Y+ F D F FE T 
Sbjct: 544  KLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFETTP 603

Query: 659  DQATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTTLLCE 718
            DQA AI AV+ DM     MDRLVCGDVGFGKTEVA+RAAF+AV   KQVAVL PTTLL +
Sbjct: 604  DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTLLAQ 663

Query: 719  QHYQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMKFDRL 778
            QH+  F+DRFA+WPV+I  LSRF++ KE  Q ++    GKIDI+IGTHKLL  ++K+  L
Sbjct: 664  QHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQSDVKWKDL 723

Query: 779  GLVMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQKR 838
            GL+++DEEHRFGVR KE +KA+RA+VD+LTLTATPIPRTL M++ G+RD S+IAT P +R
Sbjct: 724  GLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783

Query: 839  LAIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIVVGHG 898
            LA+KTFV ++ + ++REA+LRE+ RGGQVY+L+N+V+ I    ++L  LVPEARI +GHG
Sbjct: 784  LAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAIGHG 843

Query: 899  QMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQLRGRV 958
            QM ERELERVM DF  QR N+L+CTTIIETGID P ANTI+I RA+ FGLAQLHQLRGRV
Sbjct: 844  QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903

Query: 959  GRSHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVLGENQ 1018
            GRSHHQAY++LL    KA+T  A++RLEAI  +E+LGAGF LA HDLEIRGAGE+LGE+Q
Sbjct: 904  GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQ 963

Query: 1019 SGEMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPDVHER 1078
            SG M+ +GF+LY E+L  AV ALK GREP L       TE+ L  P+LLPD + PDV+ R
Sbjct: 964  SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023

Query: 1079 LTLYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLDATAS 1138
            L+ YKR+++ + E ++  ++ ELIDRFG LP   + LL   RLR  A+ LGI KL+    
Sbjct: 1024 LSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEK 1083

Query: 1139 QLTVQFCPNPPIEPIRIIELIQKN-RHFKLAGQDKLAVVRHMPTLKERVDAVKDLFRQL 1196
               ++F     + P+ +I L+QK  +HF+L G  +L   + +   K R+D V++  RQL
Sbjct: 1084 GGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMRQL 1142