Pairwise Alignments

Query, 1198 a.a., transcription-repair coupling factor Mfd from Dechlorosoma suillum PS

Subject, 1149 a.a., transcription-repair coupling factor from Dickeya dianthicola ME23

 Score = 1024 bits (2647), Expect = 0.0
 Identities = 548/1141 (48%), Positives = 751/1141 (65%), Gaps = 21/1141 (1%)

Query: 67   RSGERLHLPPLAGSADALALARLGSQARSQKRLLAVLTASPADAQRLLEEIPWFAPDLKV 126
            ++GE+  L  L G+A A+  A +         L+ ++T    +A RL +EI  F     V
Sbjct: 12   KAGEQRLLGQLTGAACAVECAEI---VERHAGLVVLITPDMQNALRLRDEIQQFTAQ-PV 67

Query: 127  RLLPDWETLPYDNFSPHHDLVSERLATLYAVSRGECEVLLVPATTAVYRLTPPSYLAAYT 186
              LPDWETLPYD+FSPH +++S RL+TLY +      VL++P  T + ++ P ++L  + 
Sbjct: 68   MTLPDWETLPYDSFSPHQEIISARLSTLYQLPSLTRGVLILPVNTLMQKVCPHAFLHGHA 127

Query: 187  FFLKKGEKLDAEQFRSQLTLAGYTHVTQVVSPGEYSIRGGLVDLFPMGSALPYRIDLFDE 246
              LKKG++L  ++ R+QL  AGY  V QV+  GE++ RG L+DLFPMGS  P+RID FD+
Sbjct: 128  LMLKKGQRLSRDRLRNQLEQAGYRSVDQVMEHGEFATRGALLDLFPMGSEEPFRIDFFDD 187

Query: 247  EIETLRTFDADTQRSLYPVPEIRLLPAREFPLDDGGRTRFRQRFREVFEGDPAKSGIYKD 306
            EI++LR FDADTQR+L  V +I LLPAREFP D      FR ++RE FE       +Y+ 
Sbjct: 188  EIDSLRLFDADTQRTLNEVEQIHLLPAREFPTDKTAIELFRSQWREQFEVRRDAEHVYQQ 247

Query: 307  VSNGVPSAGIEYWLPLFFEETA-TLFDYLPKDAVLCQHRDVALALQDFWRDTQSRYNMLA 365
            VS G   AGIEYW  LFF +    LF YLP   +L    D+      FW+D Q R++   
Sbjct: 248  VSKGTLPAGIEYWQSLFFNQPLPALFSYLPTGTLLVNTGDIQQGADRFWQDIQQRHDSRR 307

Query: 366  GDKARPLLPPAELFLSEEQFFVAAKDYAKLILGTPAEGMPPLATAV-------PTVAVER 418
             D  RPLLPP  L+L  +  F   K + ++ L +  + +P  A  +       P +AV+ 
Sbjct: 308  VDPMRPLLPPNALWLPVDTLFAELKQWPRVQLRS--DTLPDKAANINLGYQPLPDLAVQH 365

Query: 419  RAEDPLTALKQFIAGRQGRRTLLLAESAGRRETLQQLLLEHGLKPAASADFAAFLGGDAP 478
            + + PL AL++F+  + G + +   ES GRRETLQ++L    L PA              
Sbjct: 366  QNKSPLDALRRFVE-QFGGQIVFSVESEGRRETLQEVLSRIKLSPAPVKSLEQTASPGCY 424

Query: 479  LALGVAPLQSGFC--LDGLAIITETELYAGSPNRRSRQNAQRRASMDNWLRDLTELKVGD 536
            L +G +  + GF   L    +I E++L     +RR RQ+++R  + D  +R+L EL+ G 
Sbjct: 425  LMIGAS--EHGFIDTLRQRTLICESDLLGERVSRR-RQDSRRTINTDTLIRNLAELRPGQ 481

Query: 537  PVVHESHGIGRYMGLLHLDLGEGDTEFLELHYANEAKLYVPVSQLHVISRYSGNEPDAAP 596
            PVVH  HG+GRY GL  L+ G    E+L LHYA E KLYVPVS LH+ISRY+G   ++AP
Sbjct: 482  PVVHLEHGVGRYAGLTTLEAGGIKAEYLILHYAGEDKLYVPVSSLHLISRYAGGAEESAP 541

Query: 597  LHSLGSGQWEKAKKKAAEQARDTAAELLALYAARAARQGHAFAFTENDYEAFADGFGFEE 656
            LH LG   W +A++KAAE+ RD AAELL +YA RAA  G AF      Y+ F  GF F+ 
Sbjct: 542  LHKLGGDAWVRARQKAAEKVRDVAAELLDVYAQRAAHTGFAFKHDREQYQLFCQGFPFDT 601

Query: 657  TEDQATAIAAVIEDMKSGKPMDRLVCGDVGFGKTEVALRAAFVAVAGGKQVAVLCPTTLL 716
            T DQA AI AV+ DM     MDRLVCGDVGFGKTEVA+RAAF+AV   KQVAVL PTTLL
Sbjct: 602  TPDQAQAINAVLSDMCRPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLL 661

Query: 717  CEQHYQTFKDRFADWPVQIAELSRFKTAKETAQAMKDLEAGKIDIVIGTHKLLSKEMKFD 776
             +QH+  F+DRFA+WPV+I  LSRF++ KE  Q ++  + GK+DI+IGTHKLL  ++ + 
Sbjct: 662  AQQHFDNFRDRFANWPVRIEMLSRFRSQKEQTQVLEQTQEGKVDILIGTHKLLQSDVYWL 721

Query: 777  RLGLVMIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQ 836
             LGL+++DEEHRFGVR KE +KA+RA VD+LTLTATPIPRTL M++ G+RD S+IAT P 
Sbjct: 722  DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGIRDLSIIATPPA 781

Query: 837  KRLAIKTFVAKFSDGIIREAVLRELKRGGQVYFLHNEVDTIDNMREKLQSLVPEARIVVG 896
            +RLA+KTFV ++   ++REA+LRE+ RGGQVY+L+N+V+ I+   ++L  LVPEARI +G
Sbjct: 782  RRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIEKAAQQLNELVPEARIAIG 841

Query: 897  HGQMNERELERVMRDFTQQRANLLLCTTIIETGIDNPHANTILINRAEKFGLAQLHQLRG 956
            HGQM ER+LERVM DF  QR N+L+CTTIIETGID P ANTI+I RA+ FGLAQLHQLRG
Sbjct: 842  HGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPSANTIIIERADHFGLAQLHQLRG 901

Query: 957  RVGRSHHQAYSYLLVQDEKALTKQAKQRLEAIQHMEELGAGFYLAMHDLEIRGAGEVLGE 1016
            RVGRSHHQAY+YLL  + KA++  A +RLEAI  +E+LGAGF LA HDLEIRGAGE+LGE
Sbjct: 902  RVGRSHHQAYAYLLTPNPKAMSNDAHKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961

Query: 1017 NQSGEMQEVGFNLYTEMLNRAVAALKQGREPDLTQPLGVTTEINLHAPALLPDAYAPDVH 1076
             QSG+M+ VGF+LY ++L  AV +LK GREP L   +   T++ L  PALLPD + PDV+
Sbjct: 962  GQSGQMESVGFSLYMDLLESAVESLKAGREPSLEDLISGQTDVELRLPALLPDDFIPDVN 1021

Query: 1077 ERLTLYKRLSNCETEEDINALQEELIDRFGELPPQGQCLLATHRLRLLARPLGIVKLDAT 1136
             RL+ YKR+++ + + +++ L+ ELIDRFG+LP   + LL    LR  A+ LGI +++  
Sbjct: 1022 TRLSFYKRIASAKNDNELDDLKAELIDRFGKLPDAARHLLQVAGLRQQAQTLGIKRIEGN 1081

Query: 1137 ASQLTVQFCPNPPIEPIRIIELIQKN-RHFKLAGQDKLAVVRHMPTLKERVDAVKDLFRQ 1195
                 V+F  +  ++P  +I L+Q++ + ++L G  +L  ++ +    +R+  +  L  +
Sbjct: 1082 DKGGFVEFSQHNRVDPTHLIGLLQRDPKIYRLDGPSRLKFIKDLGGYPQRLTFITTLLEE 1141

Query: 1196 L 1196
            +
Sbjct: 1142 M 1142