Pairwise Alignments

Query, 1279 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  337 bits (863), Expect = 4e-96
 Identities = 222/665 (33%), Positives = 343/665 (51%), Gaps = 46/665 (6%)

Query: 514  EERRILAEMAQAKALAEAAAQAKADFLANMSHEIRTPMNAVIGMTHLALKTDLDERQREY 573
            E + I  +MA+ +AL   A++ K++FLANMSHEIRTP+N ++G THL  K+++  RQ +Y
Sbjct: 266  EIQNIELDMARKEALE--ASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDY 323

Query: 574  LRKIQHSSQHLLGIINDILDFSKSEAGKLHIEQIDFDLEKVLEDVSSLMSERATSKGLEF 633
            L  I+ S+ +LLGIIN+ILDFSK EAGKL ++ I F+L  +++D  ++++  A +K LE 
Sbjct: 324  LNTIEKSADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLEL 383

Query: 634  VIEMADEVPRHLVGDPLRIGQVLINYASNAVKFTERGEVAIHVGLEEDQGQEVLLRFAVH 693
            +  +  + P  LVGDPLR+ Q+L N  SNA+KFT  G + +   LE++      LR +V 
Sbjct: 384  LSLIYRDTPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQ 443

Query: 694  DTGIGIKAGELPTLFNSFQQADSSTTRKYGGTGLGLVIAKRLAELMGGQVGAESEPGRGS 753
            DTGIG+   ++ TLF +F QAD+S  R+ GGTGLGLVI+KRL E MGG++G +S PG GS
Sbjct: 444  DTGIGLSPQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGS 503

Query: 754  TFWFTARLGRSSNARHRAPPRPDLRTRRLLVVDDHDHARDVVCDMLRSMSFQVSDTDSGN 813
             FW +  L ++ +     PP+P L  RR  +VD H+ AR  +   L      VS   S +
Sbjct: 504  QFWISLNLPKAHDDAEALPPQP-LLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYD 562

Query: 814  RCLAELQRASAAGEPYDIVFLDWQMPEMDGLATAREIRRLELPQPPLVLMITAYGRDELA 873
            + L  +Q AS AG P++   L   +  +         ++LE      V++          
Sbjct: 563  QLLQGVQAASQAGLPFEFAVLGANLGNLSPEQLGHYHQQLERYHCQCVVLC--------- 613

Query: 874  RSAGESGL------QGIEEILIKPVSPSQLFNTVMRILDHEDGPHSAADPEALPDLAPLA 927
                E  L       G  ++L KP    +L   ++ ++         ++P       P  
Sbjct: 614  -PTTEQALYHPYLPNGHGQLLSKPTCTRKLRRLLLELVQPRRPLAEGSNPNG--QRRP-- 668

Query: 928  GLRVLLVEDNQLNQEVASEFLAGANMVVDVADDGASALEKVRQQRYDVILMDMQMPVMDG 987
              ++L V+DN  N  +    L      V   ++G +A++ V+++ +D++LMD+QMP MDG
Sbjct: 669  --KILCVDDNAANLLLVKTLLEDLGAEVLAVNNGYAAVQAVQEELFDLVLMDVQMPGMDG 726

Query: 988  IAATREIR---RQFPAAVLPILAMTANAMEQDRERCLAAGMNDHIAKPVDPRDLLGKLLK 1044
             A T +IR          LPI+A+TA+AM  ++   L +GM+D++ KP+  R L   ++K
Sbjct: 727  RACTEQIRLWENTQSGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMK 786

Query: 1045 WLAPGAPLVAPQAAAPLPGTVTPTPPVAAPAKADRQPFAGIPGLDATLGLHQALDREGLY 1104
            W   G  L  PQ A                   D      +  LD   GL  A  +  L 
Sbjct: 787  W--TGLSLGTPQQA-----------QAELLTNGDE-----LKVLDPEEGLRLAAGKADLA 828

Query: 1105 LRLMDKFVSGQRDAPQRLARAIDAGDWVGAEREAHTLKGVSAQIGAMPLRDLAEGLEHAI 1164
              ++   ++      + +  A  A D  G   + H L G S   G   LR   +  E  +
Sbjct: 829  ADMLSMLLASLDTDREAIRAARAADDRNGLIEQVHRLNGASRYCGVPQLRAACQRSETLL 888

Query: 1165 RQRDP 1169
            +Q +P
Sbjct: 889  KQDNP 893