Pairwise Alignments

Query, 792 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 795 a.a., Sensory box histidine kinase from Pseudomonas putida KT2440

 Score =  207 bits (527), Expect = 2e-57
 Identities = 134/375 (35%), Positives = 201/375 (53%), Gaps = 10/375 (2%)

Query: 407 LVTIHMDITARRQAEEGLRQRLMLQDKLARVAASVPGVIYSIKLRP-DGTFCIPYAMQGS 465
           LV    D+T R +A   LR+    + +L  +A +VPG+++ ++  P +G    PY  +GS
Sbjct: 429 LVVYLADVTERHRALAALRES---EARLKGIAGNVPGLVFRLERDPAEGDLEFPYISEGS 485

Query: 466 VDIFGLRPEDLTEDLTEDLGPVLSRIHGADQERVLAVVLESARTMAPWHCEFRVHHPQGG 525
             + G  P ++       L  ++     AD  RV  + L S +    W  + R+   QG 
Sbjct: 486 EALVGYAPSEIQHPQM-GLRNLVHPEDRADYHRVQDLALASDQD---WSWQGRILTRQGE 541

Query: 526 VRWVESKAVPRLEDDGCVIWHGYIHDVSARKQADAELMRSRDQLRALNEGLQRVREEERS 585
            RW + KA  R   +G V+W G + D++  K+A+  L +S++QLR L+  L+ VREEE++
Sbjct: 542 QRWADIKASARHLGNGQVVWDGVVWDITQGKRAELALAKSQEQLRELSAHLESVREEEKA 601

Query: 586 RISLEIHDQLGQSLTVLKLEMAWLRARLLGGQAEEKTRLQEVGRLIDDTLRAVRTISWDL 645
           RI+ E+HD+LGQ LTVLKLE++               RL  + RLI    + VR ++  L
Sbjct: 602 RIAREVHDELGQMLTVLKLEVSMCELAYAELDPGLNDRLASMKRLIAQLFQLVRDVATAL 661

Query: 646 RPGILDTLGLGAGVEWLVDDFRRRLGIRCNVVVPRERLELPDVLATHLFRICQELLTNVA 705
           RP ILD  G+ + +EW    F  R  I C V VP     L D  AT LFRI QE LTNV 
Sbjct: 662 RPPILDA-GIASAIEWQARRFEARTQIPCLVQVPDNLPALSDAKATGLFRILQEALTNVM 720

Query: 706 RHAQANRIDVSLGLADGRVLLEVRDNGRGMPMLPAHGHSLGLLGIKERAAQCGGEVHIAT 765
           RHAQA+ +++ L    G++ + V D+G+G         S GL+G++ER    GG + + +
Sbjct: 721 RHAQAHSVEIELVREGGQLRMTVSDDGQGFCREQTRPTSFGLVGVRERVLMLGGSMTLES 780

Query: 766 RPEIEGTRVRVLVPL 780
            P  EGT + V +PL
Sbjct: 781 EPG-EGTSLSVAIPL 794



 Score = 30.4 bits (67), Expect = 4e-04
 Identities = 43/161 (26%), Positives = 62/161 (38%), Gaps = 9/161 (5%)

Query: 24  LLLDRETIPRLLSSLNLGRLLHLSLESSDLGIWCYEHQQDRIFLDGRASLLLGLPTRAAR 83
           LL  RE++          RL   +++ S +GI          + +  A  +LG  +  A 
Sbjct: 308 LLAARESLVERQVREEALRLSQFAIDQSTVGILWVNWDSHVRYANHAAERMLGY-SEGAL 366

Query: 84  LAEFLECVVPE-DRERIRRIWLHPPTTAAP-GTVEFRVGDSHRGLRHLSLSSGLPGRGGK 141
           L   L    P  + +R   +W    T A   G  E +   + + L  + LS         
Sbjct: 367 LERPLSDFEPSLNMDRWLELWKGARTGAGGVGQFETQCRRADQSLLPVELSLSF------ 420

Query: 142 RRRRSGAMAMGTLQDVTERKKVEIALRESEARFSTIFRTCP 182
            R R     +  L DVTER +   ALRESEAR   I    P
Sbjct: 421 LRFRDSEYLVVYLADVTERHRALAALRESEARLKGIAGNVP 461



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 20/72 (27%), Positives = 31/72 (43%)

Query: 245 QSERSIRRPDGQVRHLLISVDLVFLDSERYLQWTLLDVTENRRSQALASRNEILTNAIMN 304
           Q E   RR D  +  + +S+  +      YL   L DVTE  R+ A    +E     I  
Sbjct: 399 QFETQCRRADQSLLPVELSLSFLRFRDSEYLVVYLADVTERHRALAALRESEARLKGIAG 458

Query: 305 SLDVAVAVLDRE 316
           ++   V  L+R+
Sbjct: 459 NVPGLVFRLERD 470