Pairwise Alignments

Query, 650 a.a., DNA helicase, Rad3 from Dechlorosoma suillum PS

Subject, 762 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score = 67.8 bits (164), Expect = 2e-15
 Identities = 157/617 (25%), Positives = 244/617 (39%), Gaps = 75/617 (12%)

Query: 19  GPLSANIPGYRTRSQQVEMAEKIAAAIADNRMLVAEAGTGTGKTYAYLVPALLSG----- 73
           G L+ + P  + R  Q ++AE +  A++  R L+A+A TG GKT   L P L +      
Sbjct: 181 GLLALSFPYPQFRKGQRQLAETLYKAVSTGRCLMAQASTGIGKTLGTLFPLLKAMVPQQL 240

Query: 74  GKVIVSTGTKTLQDQLFNKDIPTVRAALKAPVKVALLKGRANYVCPY-----HLDRSLLD 128
            K+   T  KT    L    +  +  A   P    L     +  C Y     H +   L 
Sbjct: 241 DKLFFLTA-KTPGRALALDALRQITDATPQPALRTLELIARDKACEYPDKACHGESCPLA 299

Query: 129 GRFQNREDVAYIQKIARFAKETRSGDKAECLDVPENATAWIMATSTRENCLGQECPHHKE 188
             F +R   A               + A  L + + A       + RE  L      H+ 
Sbjct: 300 AGFYDRLPAAR--------------EAAAALPLLDRA-------NLREVALA-----HQV 333

Query: 189 CFVLQARKEALSADVVVVNHHLFFADVMLKDEGMAELLPACNAVIFDEAHQLPETASLFF 248
           C     ++ A  ADV+V +++ +F D      G+ +L     AV+ DEAH L E     +
Sbjct: 334 CPYYLGQEMARWADVLVADYNYYF-DAHALLFGLTQLNQWRVAVLVDEAHNLVERGRGMY 392

Query: 249 GDSFSTSQVLDLARDARSEGLASARDCLDLQEATRIVDKAAKDLRLTVAVEPARYAWGQL 308
             S    Q+L L R ++  GL SA D L+ Q      ++ A         E    A  Q 
Sbjct: 393 SASLDQGQLLAL-RQSKPPGLVSALDRLNRQWNALYKEQRAPYQASESLPEGLLRALQQC 451

Query: 309 EGNAQFLDGLANLEKELELLNAILENQAERSEGLENCWRRNGELLQRLIQWRQEQPGVVR 368
            G  Q     A    + ++L    +        L+ C  R  EL      +   Q    R
Sbjct: 452 VGVIQEQMNQAPTHIDPQVLQFYYQ-------ALQFC--RVAELFDEHFLFDISQRQGPR 502

Query: 369 WGEAFNHSLQLNATPLDVARLFRKQLDGHPRAWIFTSATLAVQADFSHYCNELGLWDAES 428
                   L+ N TP   ARL   ++       +F SATL+ +    H+ ++L    A++
Sbjct: 503 KRRLATLCLR-NVTP---ARLLAPRMQAARSVTLF-SATLSPR----HFYSDLLGMPADT 553

Query: 429 ARWE--SPFDYGQQAVLYAPR-DIPDPNLPGFTEAVVEAAWPALKACGGGAFFLCTSLRA 485
           A  +  +PF   Q  V  A +              +V+      +   G      +S   
Sbjct: 554 AWLDVAAPFRAEQLEVRIASQVSTRYQQRQASLAPIVDLIARQYERMPGNYLAFFSSFEY 613

Query: 486 MRRTHELLAAKLEDEGLEMPLLLQ----GEGSKTELLERF----RRLGNAVLVGSQSFWE 537
           +++   LLA   E  G ++PL  Q     E ++   L+RF    R +G AVL G+  F E
Sbjct: 614 LQQVAGLLA---EQHG-QIPLWSQEPGMDEAARQAFLDRFVADGRGVGFAVLGGA--FGE 667

Query: 538 GVDVRGEALSLVVIDKLPFAPPDDPVLKARVEQMEKEGRSAFMEYQLPRAVINVKQGAGR 597
           GVD+ G  L    +  L   P  +PV +   +++ ++  + F    L   V  V Q AGR
Sbjct: 668 GVDLPGTRLIGAFVATLGL-PQVNPVNEQFKQRLGRQFGAGFDYAYLYPGVRKVIQAAGR 726

Query: 598 LIRDETDRGVLMICDPR 614
           +IR + DRGVL++ D R
Sbjct: 727 VIRGDQDRGVLVLIDER 743