Pairwise Alignments

Query, 876 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  394 bits (1012), Expect = e-113
 Identities = 231/568 (40%), Positives = 326/568 (57%), Gaps = 23/568 (4%)

Query: 309  DRAERRRAAASQALASSERRFQQLLDSAGEGICGLDRQGRLTFANPAARRLLGFG--EEL 366
            D +++RRA     +A++      + + +   I   D  G +  AN A  R+ G+   E L
Sbjct: 704  DISQQRRAEKDLRMAAT------VFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVL 757

Query: 367  PRGDFLQQVHADDAGAALRTCLEE--DRSVHSDDALFARADGSRFPVQYDLYPLAQEAGV 424
             +   +  V     G  LR  +++   R     +    R DG  +P    +  +  + G 
Sbjct: 758  DQLPGMLTVDEQQEGH-LRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGD 816

Query: 425  AQGAVLLFADIAERKRHADQIEYLAHHDALTGLPNRLLAEDRFNQALAAASRRGEQVALL 484
                V  F DI+ERK    +I  LA++DALT LPNR L +DR   AL  A R+   V L+
Sbjct: 817  LASYVCFFTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLM 876

Query: 485  FLDLDGFKTINDSLGHEVGDKVLRAVADRLRSHLRESDTVSRFGGDEFLVIMPGLQQVEV 544
            FLDLD FK INDSLGH  GD++L+ +A RL + + + DTV+R GGDEF +++      E+
Sbjct: 877  FLDLDRFKPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREM 936

Query: 545  IYP----VIGKLLACLEQPLALEHYQLSTSVSIGVAVFPHDGRDFTTLMQKADTAMYHAK 600
                   V   +L  L +P  LE+ +   + SIG+A+ P DG + + LM+ ADTAMYHAK
Sbjct: 937  ALNRAIHVAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAK 996

Query: 601  DAGRNTYRLFDEAMNLHAQETLRLRNNFQRGLDGDEFVLHLQPQ-------VVGAEALVR 653
            + G+N ++ +   MN  A E L L ++ +  ++ +EF+L+ QPQ       + GAEAL+R
Sbjct: 997  ERGKNNFQFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLR 1056

Query: 654  WQDGSR-LIAPAHFIPVAESSGFIVPLGQWVLRESCRLAARWQRELGREVTIAVNISAIQ 712
            W+  +R L+ P  FIPV E  G +V +G WVLRE+ R    W +   R   ++VNISA Q
Sbjct: 1057 WRHPTRGLVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQ 1116

Query: 713  FKRGDLERTVAEALAESGLPPHLLELELTESTLLNQTESVLSTLRTLRDQGVRLSIDDFG 772
            F  G L   +A  L ESGLPP  LELELTES L+ +    L  L +L++ G+ +++DDFG
Sbjct: 1117 FSDGQLGTRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFG 1176

Query: 773  TGYSSLAYLKRLAVNKLKIDQSFVRNLDGDAEDAAIVRAIIEMAHRLNLRTVAEGVETVE 832
            TGYSSL YLK+  ++ LKID++FV  L    +DA I RAII MAH LNL  +AEGVET E
Sbjct: 1177 TGYSSLNYLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHE 1236

Query: 833  VLQSLRRFACDEAQGYYFARPLPVDEFE 860
             L+ LR   CDE QGY F RP+P  +FE
Sbjct: 1237 QLEFLREHGCDEVQGYLFGRPMPAHQFE 1264



 Score = 42.7 bits (99), Expect = 1e-07
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 17/140 (12%)

Query: 318 ASQALASSERRFQQLLDSAGEGICGLDRQGRLTFANPAARRLLGFGEELPRGDFLQQVHA 377
           ASQ+L  SE+R++ L +S  + I   D Q +L + +P+ + +LG+  +    +  Q + A
Sbjct: 571 ASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGYQADWIFANGWQSIVA 630

Query: 378 DDAG-AALRTCLEEDRSVHSDDALFA----------------RADGSRFPVQYDLYPLAQ 420
           + A    + + +E       D A  A                RADG + P++  L  +  
Sbjct: 631 NPAQLTGIYSLMERVSKAMGDPAQMAQLCSQLPTQLFLFDCLRADGRKIPIELRLVLVWD 690

Query: 421 EAGVAQGAVLLFADIAERKR 440
           +    +G + +  DI++++R
Sbjct: 691 DDQRFEGVLGVGRDISQQRR 710