Pairwise Alignments

Query, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

Subject, 406 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Xanthobacter sp. DMC5

 Score =  122 bits (306), Expect = 2e-32
 Identities = 123/434 (28%), Positives = 182/434 (41%), Gaps = 40/434 (9%)

Query: 5   KIESLDHDARGVTRLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVLRPSCARVPP 64
           +IE +     G+ R     +F    L GE V   +  E+       + A++  S  RV P
Sbjct: 5   RIERMGAQGDGIVRGPSGPLFAPLTLAGELVRGEVEGERIR-----LDAIIELSPERVEP 59

Query: 65  RCPHFGTCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGPTWGYRHRAR 124
            CPHFG CGGC +QH E    +A K++++ + L   +R   E    P        R R  
Sbjct: 60  ECPHFGRCGGCLLQHWESAPYLAWKRQMVVDAL---SREGIEADVAPTIDAHGAGRRRVI 116

Query: 125 LTVRMVESKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRLSIRDRLPQVE 184
              R   ++  +VGF E++S  +  +  CP+L   +   L   R +   L+   +   ++
Sbjct: 117 FHARQYGAR-TVVGFAERKSHAMVAIDACPVLAPGLDQALPAARAVAEALAPLKKPLDLQ 175

Query: 185 IAVGEKCTVMVLRILEPLSGADEKLLRAFADEHGIV-------FFLQPKGPASAYRFHPV 237
           +   +    M +R   PL  A    L   AD   +          +Q + P  A     V
Sbjct: 176 LIATDTGLDMDVRGSGPLPPALLTDLAVIADRFRLARLTRHGELVIQREPPRLAMGRARV 235

Query: 238 DGPDLSYLLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGER-IADLFCGLGN 296
           D P                P  F Q      ++L   A  +     G R +ADLF G+G 
Sbjct: 236 DLP----------------PAAFLQATAEGERVL---ADHVAAGMVGARKVADLFAGVGT 276

Query: 297 FTLPIARSGARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALGHFD 356
           F L +A + ARV   E          +     GL   V     +LF   P     L  FD
Sbjct: 277 FALRLAET-ARVFAAENHAGALAALLKAGHTPGLKG-VDGEARDLFR-RPLMAAELAAFD 333

Query: 357 KMLIDPPREGAVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIVNMF 416
            ++IDPPR+GA    + L      R+VYVSCN +T ARDAA+LV   G R  G   V+ F
Sbjct: 334 AVVIDPPRQGAEAQARELAVSRLPRLVYVSCNAATFARDAALLV-AGGMRLEGVVPVDQF 392

Query: 417 PHTSHVESIALFEK 430
            +++HVE +A F +
Sbjct: 393 RYSAHVELVATFSR 406