Pairwise Alignments

Query, 431 a.a., 23S rRNA (uracil-5-)-methyltransferase RumA from Dechlorosoma suillum PS

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

 Score =  282 bits (722), Expect = 1e-80
 Identities = 174/436 (39%), Positives = 247/436 (56%), Gaps = 15/436 (3%)

Query: 1   MPVGK-----IESLDHDARGVTRLEGKTVFVEGALPGETVEYALFREKPNYAVGEVSAVL 55
           +PVGK     IE L  D RG+  L+G+T FV GAL GE VE  +   +       +  +L
Sbjct: 23  VPVGKKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKVVEARLERLL 82

Query: 56  RPSCARVPPRCPHFGTCGGCSMQHLEPTAQVAAKQRLLENNLWHLARLKPEQVYNPIYGP 115
           + +  R    C ++  CGGC++QHL   AQ+A KQR L   L  +A ++PE    P+ GP
Sbjct: 83  QAAPERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVAGVQPEAWAAPLSGP 142

Query: 116 TWGYRHRARLTVRM-VESKGMLVGFHEKRSSYVADLHTCPILPAHVSDLLVPLRQLFVRL 174
            +GYR RAR+ VR  V+++ + VGF  + S  +  +  C +L   +  +L  L  +   L
Sbjct: 143 EFGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSL 202

Query: 175 SIRDRLPQVEIAVGEKCTVMVLRILEPLSGADEKLLRAFADEHGIVFFLQPKGPASAYRF 234
           S    L  VE+  G    V+V R + PL   D+  L+AF ++     +LQ +G  +    
Sbjct: 203 SKPQALGHVELFSGTAEAVLV-RHVAPLPAEDQARLQAFCEQANAQLWLQGEGEPA---- 257

Query: 235 HPVD-GPDLSYLLPEFGLEMRFSPTEFTQVNPGINQMLIRRAMRLLDPQPGERIADLFCG 293
            PVD    L + L  + LE+ + P +F QVN  +N  +I +A+  L PQ  ER+ DLFCG
Sbjct: 258 -PVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFCG 316

Query: 294 LGNFTLPIARSGARVVGVEGLKELTRRAEENAAANGLAANVSFGVANLFECTPKSLGALG 353
           LGNF LP+AR    VV VEG++ +  RA  NA  N +  N  F  A+L +    +  A  
Sbjct: 317 LGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNV-HNARFFQADLSQPLAGTGWAAE 375

Query: 354 HFDKMLIDPPREGAVEVVKALGEDSPGRIVYVSCNPSTLARDAAILVHQKGYRFSGAGIV 413
            F  +L+DPPR+GA EVV+ +      R+VYVSCNP+TLARDA +LV Q GYR   AGI+
Sbjct: 376 GFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQ-GYRLKRAGIL 434

Query: 414 NMFPHTSHVESIALFE 429
           +MFP T+HVE++ALFE
Sbjct: 435 DMFPQTAHVEAMALFE 450