Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  375 bits (964), Expect = e-108
 Identities = 293/842 (34%), Positives = 418/842 (49%), Gaps = 83/842 (9%)

Query: 230  RSKDGRLYWVSATVVPFFDDLGVPYQYIAIRTDITAR-------KLAEARLDEQLHFSRQ 282
            R  DG   ++     P FD  G    Y    +DIT         K ++A ++     +  
Sbjct: 291  REMDGPGRFLRVNGKPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNS 350

Query: 283  VLDTLPVPLYFKDTQGRYQGFNKAFADFFGIEPSLWIGRHVRDLLPPELAEQHVARDEEV 342
            +L+++   +   D  GR    N+A A     EP+  +G    D+LP    + H A     
Sbjct: 351  ILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGS---DILPLMALDLHTAE---- 403

Query: 343  FARGGRQSYEIELITPAGARYDTLYNKAALTRPDGSVR----------------GLVGTI 386
                  + Y+I L      R DT    A+  R DGS                  G+V   
Sbjct: 404  ------KLYQILLRLTESIRDDT----ASFKRRDGSPLPVEYIASPVMDRGNQVGVVLGF 453

Query: 387  MDISERKRWEAEILRAKEAAENANRAKSDFLANMSHEIRTPMNGVIGMTELALDTELTEE 446
             DI++R+  E ++  AKEAAE  NR KS+FLA MSHEIRTPMNGVIGMT L LDT L+EE
Sbjct: 454  RDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTRLSEE 513

Query: 447  QRDYLEAVQMSANALLSIIDDILDFSKIEAGRLDVELIPFDLEKVCADALRTVAVRADQK 506
            QR + E ++ S  +LL++I+DILDFSK+EAG+LD++   F+L  +    +  +A RA  K
Sbjct: 514  QRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAK 573

Query: 507  GLELLARRGPGVPRRLLGDPGRLRQILLNLLGNAIKFTERGEIEVAVELAEPGAAGQVLY 566
            G+E+ +   P +   +  DPGRLRQ+L+NL GNA+KFTE+G + + V L +   A  +  
Sbjct: 574  GIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMAR 633

Query: 567  FCVSDTGIGIAPEKQEHIFEAFAQEDSSTTRRFGGTGLGLTICSRLCELMGGRIWVDSVP 626
            F V DTGIGI PE Q  +F  F+Q D+ST RR+GGTGLGL I  RL ELMGG + V+S  
Sbjct: 634  FDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGVESAV 693

Query: 627  GQGSAFHFTLQ---LPTDGAAAPEPERRLSGKPALLLVVANARQRCR-LQGLLASWGATV 682
            G+GS F  TL    L    AA P+    LSG    +LVV +    C  ++  L ++G  V
Sbjct: 694  GRGSRFWITLPLELLAPQSAAPPD----LSGH--RVLVVDDNPVNCDVIERQLRAFGVEV 747

Query: 683  VAAASGAEGLALLEQG-----QWDGVVADSRPVDGDAGDLLEHLARSPGRVPLLMLLSPS 737
             A      G+  L +       W+  V DS+       +++  +   P      ++++ S
Sbjct: 748  HACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPVVTGSEMVRMIHAIPMLAGTRIVVTSS 807

Query: 738  RMRQEIARCKALGVGHYLGKP----ALADELWRSLQALLEPAVAGVPATVAEAAGTPPA- 792
            +            +  +L KP     L D + R L  L  PA           A  P A 
Sbjct: 808  QGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRVL-GLTGPAERPADHAEEYKASEPAAK 866

Query: 793  GLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGG 852
             L +L+AED+PVNQQ+   +L ++GH V +   G EA+ A     +D+VLMD+QMPEM G
Sbjct: 867  RLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLPYDVVLMDVQMPEMDG 926

Query: 853  EQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVAGMDGYLLKPLQQKDLQEVLAG 912
             +ATR IRA   A    P  I A++A A R D Q    AGMDGY+ KP+ +  L E LA 
Sbjct: 927  LEATRAIRALPLAAAQVP--IVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAEALAK 984

Query: 913  LA-----RPGQEEGGFDYGRMLEGADRDVLQIIGDVFPGLARLEMAA--MEEAL-----A 960
             +     +P +        +  +  DRDVL  +         +E+    ME+A      A
Sbjct: 985  YSGAPETKPAEPPAA---PQNSKAVDRDVLDALAADIEADTVVEILVKFMEDARTRQNNA 1041

Query: 961  AA-----DWERLGRVAHSLRGAAANFGPSPLVQQATEVERLAPHQAVQPAHLAELRLALE 1015
            AA     D E++ R AH+++GAAA+ G   +      +E+ A         +  L   +E
Sbjct: 1042 AALAPTGDLEKVRREAHTIKGAAASLGLLAVRDACLALEQAARAGGEVAPQIDRLHQDIE 1101

Query: 1016 AL 1017
            AL
Sbjct: 1102 AL 1103



 Score = 30.4 bits (67), Expect = 7e-04
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 14/86 (16%)

Query: 340 EEVFARGGRQSYEIELITPAGARYDTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEI 399
           E +  R G  S+ IEL              A    P GS + +V  + DISERKR E E+
Sbjct: 162 ESMARRRGGASFPIELA-------------AGDLTPTGSPQFVV-IMRDISERKRIEREM 207

Query: 400 LRAKEAAENANRAKSDFLANMSHEIR 425
             ++E   +  ++ SD+   M  ++R
Sbjct: 208 AESEERFRDFAQSTSDWFWEMGPDLR 233