Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1248 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  359 bits (921), Expect = e-103
 Identities = 247/609 (40%), Positives = 334/609 (54%), Gaps = 18/609 (2%)

Query: 304  NKAFADFFGIEPSLWIGRHVRDLLPPELAEQHVARDEEVFARGGRQSYEIELITPAGARY 363
            N      FG  P   +G+  R     + A   V    E  +RG     E E +    +R+
Sbjct: 612  NPRLDKLFGYGPGELVGQSTRIWFADDAAFADVGGAYEALSRGEVHQREQEYLRKDQSRF 671

Query: 364  DTLYNKAALTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAKSDFLANMSHE 423
                + +A+   D S RG V  + D+++ +       RAK+AAE+A R KSDFLANMSHE
Sbjct: 672  WCRISGSAIDPSDLS-RGTVWMLEDVTQARATAEAQARAKDAAEDAARTKSDFLANMSHE 730

Query: 424  IRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIIDDILDFSKIEAGRLDVEL 483
            IRTPMN +IGM  LAL T+L   Q+DY+  +Q S   LL II+DILDFSKIEAG+L+VE 
Sbjct: 731  IRTPMNAIIGMAHLALKTDLDPRQKDYVRKIQQSGQHLLGIINDILDFSKIEAGKLEVEA 790

Query: 484  IPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLRQILLNLLGNAIKF 543
                L+KV  +    ++ +A  KGLELL   G GVP  L+GD  RL Q+L+N   NA+KF
Sbjct: 791  TEIHLDKVLENVGNLISEKATAKGLELLFDVGAGVPLDLMGDALRLGQVLINYANNAVKF 850

Query: 544  TERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQEDSSTTRRFGGTG 603
            TE GEI VAV L E      +L F V DTGIG+  E++  +F++F+Q D+STTR+FGGTG
Sbjct: 851  TEAGEIVVAVRLMEDLGPDVMLRFEVRDTGIGLTDEQKARLFQSFSQADTSTTRKFGGTG 910

Query: 604  LGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAP-EPERRLSGKPALLLVV 662
            LGL I  +L ELMGG + VDSVPGQGS F FT +L      AP  PE  L G+  +L+V 
Sbjct: 911  LGLAISKKLAELMGGSVGVDSVPGQGSTFWFTARLGKGKPRAPLIPEAELQGR-RMLVVD 969

Query: 663  ANARQRCRLQGLLASWGATVVAAASGAEGLALLEQG----QWDGVVADSRPVDGDAGDLL 718
             N   R  L  +L++    V A  SGA+ L  +        +D V  D +  D D  ++ 
Sbjct: 970  DNENARAVLVDMLSAMSFEVDAVDSGAKALDAIRDAVLDLPYDVVFLDWQMPDMDGLEVA 1029

Query: 719  E--HLARSPGRVPLLMLLSPSRMRQEIARCKALGVGHYLGKPALADELWRSLQALLEPAV 776
            E  H  R P    L+M+ +  R  + I   +A  +G  L KP     L+ S+  +     
Sbjct: 1030 EQIHSIRLPFPPHLIMVTAYGR-EEIIKGAQAADIGEVLIKPVSPAALFDSIMRVFASDQ 1088

Query: 777  AGVPA-TVAEAAGTPPA---GLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAA 832
                A  V+E      A   GL+VLL ED+ +NQ++   +L   G  V +A +G  AV  
Sbjct: 1089 RRDEAEDVSEGGSVDHAALRGLKVLLVEDNDLNQEVAGEILRDAGIEVEIADNGLIAVEK 1148

Query: 833  AARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVAG 892
            A    +DL+LMDMQMP M G  ATR IR      G   L I A++A A + DR + L AG
Sbjct: 1149 ARAGVYDLILMDMQMPVMDGVTATREIR----RLGHVDLPIIAMTANAMQADRDKCLEAG 1204

Query: 893  MDGYLLKPL 901
            M+ ++ KP+
Sbjct: 1205 MNDHIAKPI 1213



 Score = 31.2 bits (69), Expect = 5e-04
 Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 104 TANRLLGQMGLPALSPEDASLESLSQLMDTLVRERE-SSRIRLHQAH-SSLEQQKFALDQ 161
           T  R+L  + LP L+     L    +    L   RE +  +  +Q    SL  ++ A+ +
Sbjct: 536 TGRRVLDDV-LPLLAMRMEILARTERTQQLLAATRELAETLEANQTEIQSLLSEQQAIFE 594

Query: 162 HAIVSVTDVEG-FIIEANDRFCEISGYSREELVGRNHRVVKSGIHPPAFYQEMWDTIVHG 220
            A V +  ++   I+  N R  ++ GY   ELVG++ R+  +     A     ++ +  G
Sbjct: 595 AATVGIAFLKNRVIVRGNPRLDKLFGYGPGELVGQSTRIWFADDAAFADVGGAYEALSRG 654

Query: 221 RVWQGEVCNRSKDGRLYW--VSATVVPFFDDLGVPYQYIAIRTDIT-ARKLAEAR 272
            V Q E     KD   +W  +S + +   D   +    + +  D+T AR  AEA+
Sbjct: 655 EVHQREQEYLRKDQSRFWCRISGSAI---DPSDLSRGTVWMLEDVTQARATAEAQ 706