Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1196 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  324 bits (831), Expect = 2e-92
 Identities = 259/794 (32%), Positives = 381/794 (47%), Gaps = 67/794 (8%)

Query: 257  IAIRTDITAR--KLAEARLDEQLHFSRQVLDTLPVPLYF-KDTQGRYQGFNKAFADFFGI 313
            +A+  D  A+  + +EA ++ +    R++LDT P+ L   + +       N  +++ + +
Sbjct: 382  LAVFRDAMAKLQESSEALIESERRL-RRILDTSPLALAISRVSDNAILLVNPRWSELYRL 440

Query: 314  EPSLWIGRHVRDLLPPELAEQHVARDEEVFARGGRQSYEIELITPAGARYDTLYNKAALT 373
                 +G  V            +   E V  RG    +E  +    G  +  + + A + 
Sbjct: 441  PKGRALGMTVASCYADPANRARLV--ELVRKRGFVSGFECRMRASDGHEFWAMLSAAEIE 498

Query: 374  RPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAKSDFLANMSHEIRTPMNGVIG 433
              DG    ++ +  DI+  K  EA +  AK+ AE A++AKS FLA MSHEIRTPMNGV+ 
Sbjct: 499  M-DGEP-AVIASSTDITRHKEEEAALAEAKKVAEEASQAKSLFLATMSHEIRTPMNGVLT 556

Query: 434  MTELALDTELTEEQRDYLEAVQMSANALLSIIDDILDFSKIEAGRLDVELIPFDLEKVCA 493
            M +L  D  L  EQR+    ++ SA +LL+II+DILDFSKIEA +L +EL+   L +V  
Sbjct: 557  MAQLLEDMPLPAEQREMARVIRDSATSLLTIINDILDFSKIEADKLQLELVDLSLSEVVE 616

Query: 494  DALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLRQILLNLLGNAIKFTERGEIEVAV 553
                 + +RA +KG+ L+    P +   ++GDP RLRQI+ NL GNAIKFT++G + +AV
Sbjct: 617  GVADLLTIRAQEKGISLITFVDPALTDMVVGDPIRLRQIITNLAGNAIKFTDKGYVRIAV 676

Query: 554  ELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQEDSSTTRRFGGTGLGLTICSRLC 613
               +P      L F ++DTGIG+  E+Q  +FE F Q D + +RR+GGTGLGL+IC RL 
Sbjct: 677  RALDPRERPLRLEFSITDTGIGLDSEQQARLFEPFMQADITISRRYGGTGLGLSICRRLV 736

Query: 614  ELMGGRIWVDSVPGQGSAFHFTLQLPTDGA-AAPEPERRLSGKPALLLVVANARQRCRLQ 672
             +MGG I V S  GQGS F F  Q+P + A    EP   LSG   L+L        C L+
Sbjct: 737  AMMGGEIGVRSNVGQGSTFWF--QVPLEPAEVEAEPPLDLSGIAVLVLAEGPVAAEC-LR 793

Query: 673  GLLASWGATVVAAASGAEGLALLEQGQWDGVVADSRPVDGD---------AGDLLEHLAR 723
              L   GA V   AS    +A +      G   D   +DG          AG L+   A 
Sbjct: 794  QYLGHLGAQVAVVASAEGAVAAVRAAALAGWTYDVALLDGGQDFRLRLGVAGALM--TAA 851

Query: 724  SPG-RVPLLMLLSPSRMRQEIARCKALGVGHYLGKPALADELWRSLQALL---EPAVAGV 779
             P   + + ML++        +  KA G+   L KP    +LWR++   +    P     
Sbjct: 852  GPDLELKVAMLVAQDAFAAVASEVKAAGLYAVLPKPIRRRQLWRNVAVAVGRATPEAEAA 911

Query: 780  PATVAEAAGTPP-------AGLEVLLAEDHPVNQQLMRNMLERMGHRVTLARHGGEAVAA 832
              T AE    PP       AG  +L+AED+P N+ ++R+++ER+G+ + +  +G EA   
Sbjct: 912  DGTGAEEGWRPPTMEEAAAAGALILVAEDNPTNKVVIRHLMERLGYAIEVVGNGTEAWER 971

Query: 833  AARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALSAAARREDRQRGLVAG 892
               R + L+L D  MPEM G + T+ IR  E   G   L I AL+A A     +R L +G
Sbjct: 972  MQIRDYGLLLTDCHMPEMDGYELTQRIREWEVETG-HDLPIVALTADALAGTARRCLDSG 1030

Query: 893  MDGYLLKPLQQKDLQEVLAGL------ARPGQEEGGFDYGRMLEGA-------DRDVL-- 937
            M+ +L KP+    L   +  L       R  +  GG      L  A       D  +L  
Sbjct: 1031 MNAFLAKPIDLVQLDSTIRRLLPTAVGLRRRRSGGGEGAAAPLPAAIPVAPPKDEALLPV 1090

Query: 938  -------QIIGDV----------FPGLARLEMAAMEEALAAADWERLGRVAHSLRGAAAN 980
                   QI GD+          F    R  +  + +AL A D       AHS +GA  +
Sbjct: 1091 LDLTPMRQIFGDIGDEVRELLALFVDTTRPLVVDLGDALQAGDALAAREAAHSAKGAGNS 1150

Query: 981  FGPSPLVQQATEVE 994
             G     +   E E
Sbjct: 1151 AGAFRFAKLCAEAE 1164