Pairwise Alignments

Query, 1026 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1616 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  368 bits (944), Expect = e-105
 Identities = 304/921 (33%), Positives = 441/921 (47%), Gaps = 90/921 (9%)

Query: 135  VRERESSRIRLHQAHSSLEQQKFALDQHAIVSVTDV-EGFIIEANDRFCEISGYSREELV 193
            V ERE +   L     ++E+Q  A+ Q A + +  + +  I+ +N    ++ GY   EL 
Sbjct: 608  VTEREEA---LAAMTGAMEEQS-AIFQSAGLGIAVIRDRHIVRSNKSLAQLLGYGPSELD 663

Query: 194  GRNHRVVKSGIHP-PAFYQEMWDTIVHGRVWQGEVCNRSKDGRLYWVSATVVPFFDDLGV 252
            G++  VV +         +E +  +  G  +QG+   R K+G  +W   T     D   +
Sbjct: 664  GQSTGVVFANEGDFERMGREAYPALAQGETFQGDWEYRRKNGTTFW-GRTSGRAIDSGDL 722

Query: 253  PYQYIAIRTDITARKLAEARLDEQLHFSRQVLDTLPVPLYFKDTQGRYQGFNKAFADFFG 312
                + +  DIT R+  E RL +     R + +++P  ++    +G          DF+ 
Sbjct: 723  SKGSVWVCDDITDRRNWEHRLQQAEERLRALTNSVPAAVFELRNEGE---------DFW- 772

Query: 313  IEPSLWIGRHVRDLLPPELAEQHVARDEEVFAR---GGRQSYE--IELITPAGARYDTLY 367
                 ++GR VR +L    A+Q +A    ++     G R++ E  IE     G R+ T Y
Sbjct: 773  ---FTFMGRQVRGILGVG-ADQLLANAGRLYGTVRDGDRETLESVIEGALEQGVRFSTQY 828

Query: 368  NKAA--------------LTRPDGSVRGLVGTIMDISERKRWEAEILRAKEAAENANRAK 413
               A              + +  G      G   D+S  K  EA + RAKE AE+A R K
Sbjct: 829  RLDAPGEERWVRMEAVPIVAQAGGGT--WAGFFQDVSAEKLAEAALTRAKELAEDATRMK 886

Query: 414  SDFLANMSHEIRTPMNGVIGMTELALDTELTEEQRDYLEAVQMSANALLSIIDDILDFSK 473
            SDFLANMSHEIRTPMN +IGM+ LAL TELT  Q DY++ +Q +   LL II+DILDFSK
Sbjct: 887  SDFLANMSHEIRTPMNAIIGMSHLALKTELTPRQHDYVKKIQSAGQHLLGIINDILDFSK 946

Query: 474  IEAGRLDVELIPFDLEKVCADALRTVAVRADQKGLELLARRGPGVPRRLLGDPGRLRQIL 533
            IEAG+L VE   F+L+KV  +    +  +   K LEL+      VPR L+GD  RL QIL
Sbjct: 947  IEAGKLAVEHTDFELDKVLDNIANLLTEKTRAKSLELVFDIPSEVPRTLVGDSLRLGQIL 1006

Query: 534  LNLLGNAIKFTERGEIEVAVELAEPGAAGQVLYFCVSDTGIGIAPEKQEHIFEAFAQEDS 593
            +N   NA+KFTE GEI++   + E      +LYF V DTGIGI  E+   +F++F Q D+
Sbjct: 1007 INYANNAVKFTENGEIDIIARVKERSETEVLLYFAVRDTGIGITAEQAARLFQSFEQADT 1066

Query: 594  STTRRFGGTGLGLTICSRLCELMGGRIWVDSVPGQGSAFHFTLQLPTDGAAAPEPERRLS 653
            STTR+FGGTGLGL I  RL ELMGG + V+S  G+GS F FT ++          +RRL 
Sbjct: 1067 STTRKFGGTGLGLAISKRLAELMGGEVGVESEYGKGSTFWFTARM----GIGTVRKRRLL 1122

Query: 654  GKPAL-----LLVVANARQRCRLQGLLASWGATVVAAASGAEGLALLEQGQWDG-----V 703
              P L     L+V  N   R  L  L+A     V   ASG E +  +++    G     V
Sbjct: 1123 PSPDLRGRRVLVVDDNDNARTVLADLMAGMTFQVTTRASGLEAVDEVKRAAMAGTPYEIV 1182

Query: 704  VADSRPVDGDAGDLLEHL-ARSPGRVPLLMLLSPSRMRQEIARCKALGVGHYLGKPALAD 762
            + D R    D  +   HL A      P L++++     + +      G+   L KP  A 
Sbjct: 1183 LLDWRMPGMDGIETAHHLMALGLDPAPRLLMVTAYGREEVLNLITEAGIEDVLIKPVSAS 1242

Query: 763  ELWRSLQALL-----EPAVAGVPATVAEAAGTPPAGLEVLLAEDHPVNQQLMRNMLERMG 817
             L+ ++  L      EP       + +E       G  +LL ED+ +NQQ+   +L   G
Sbjct: 1243 ILFDTIMRLFGCQPAEPRDVDGGHSSSEMHLETIRGARILLVEDNDLNQQVATELLGDAG 1302

Query: 818  HRVTLARHGGEAVAAAARRRFDLVLMDMQMPEMGGEQATRLIRADEQARGLAPLRIYALS 877
             +V +A  G  A+A   R  +D+VLMDMQMP M G  ATR IR   Q      L I A++
Sbjct: 1303 FQVDVADDGAIALAKVRRNAYDMVLMDMQMPVMDGVAATREIRRLGQ---FDHLPIVAMT 1359

Query: 878  AAARREDRQRGLVAGMDGYLLKPLQQKDLQEVLAGLARPGQEEGGFDYGRML---EGADR 934
            A A + DR R L AGM+ ++ KP+    L   L     P +      +G       G + 
Sbjct: 1360 ANAMQRDRDRCLDAGMNDFITKPIDPDQLWAALLRWIAP-RHSPAAAHGASAPSETGEEH 1418

Query: 935  DVLQIIG-DVFPGLARLE--------------------MAAMEEALAAADWERLGRVAHS 973
             + +I G D   GL R++                       +  AL A DW    R+AH+
Sbjct: 1419 SIPRIDGLDTTTGLRRVQGKTRLYLTSLRKFAAGRKSVAGDIRAALEADDWSTAERLAHT 1478

Query: 974  LRGAAANFGPSPLVQQATEVE 994
             +G A   G   + ++A ++E
Sbjct: 1479 TKGLAGMIGADEVQRRAADLE 1499