Pairwise Alignments

Query, 168 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score = 84.0 bits (206), Expect = 3e-21
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 3   PSDSLLSRIYLENYREIVDFLSLRTGCRHAAQDCAQDCWFKLCKA-RPAEAVDNGRSYVF 61
           P   LL+  + E+Y +++ FL+ R   R  A D AQ+ + KL      A  V + RS++F
Sbjct: 5   PMSGLLAS-FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIF 63

Query: 62  RVAANIAVDWHRSNGRELRLQADYAASGDPTATSPDTLETVQQRRNLERLEAIIRALPPR 121
           RVA N+A+D  R   R      D   + +    +P     +  R  L+ L+  +  LP  
Sbjct: 64  RVAGNLAIDALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDN 123

Query: 122 TVEVFVLNRLEGLTYTETAKRLGISASAVEKHIARVLLQC 161
             +  +LNR+EGLT  + A+RLG+S S V K+I + L  C
Sbjct: 124 ARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163