Pairwise Alignments

Query, 939 a.a., excinuclease ABC, A subunit from Dechlorosoma suillum PS

Subject, 955 a.a., UvrABC system protein A from Azospirillum sp. SherDot2

 Score = 1192 bits (3085), Expect = 0.0
 Identities = 593/937 (63%), Positives = 732/937 (78%), Gaps = 4/937 (0%)

Query: 4   IKIRGARTHNLKNISLDLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I +RGAR HNLKN+ +DLPRD+LIVITGLSGSGKSSLAFDT+YAEGQRRYVESLSAYARQ
Sbjct: 5   ISVRGAREHNLKNVDVDLPRDELIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 64

Query: 64  FLQLMEKPDVDLIEGLSPAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEH 123
           FL+LM+KPDVD IEGLSPAISIEQK TS NPRSTVGTVTEI+DY+RLL+AR G PY P  
Sbjct: 65  FLELMQKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGIPYSPAT 124

Query: 124 GEPLEAQTVSQMVDHVLALPEETKLMILAPVVANRKGEQLDLFTELRAQGFVRLRVDGTI 183
           G P+E+QTVSQMVD +L +PE T+L++LAP V  RKGE      +LR +GF R+RVDGT+
Sbjct: 125 GLPIESQTVSQMVDRILGMPEGTRLLLLAPFVRGRKGEYKKEIQDLRKRGFQRVRVDGTM 184

Query: 184 YEIDNLPKLAKSQKHNIDVVVDRLKVREDMRQRLAESFETALRHADGRAIALEMESNQEH 243
           YEID +P L K  KH+I+VVVDR+ VRE +  RLA+S ETAL  ADG       E+N++ 
Sbjct: 185 YEIDEVPALNKKLKHDIEVVVDRIVVREGLGNRLADSLETALGLADGIVWVENAETNEQT 244

Query: 244 LFSAKFACPICSYALQELEPRLFSFNNPMGACPKCDGLGVIQFFDPKRVVAHPDLSLAAG 303
           +FS KFACP+  + + E+EPRLFSFNNP GACP CDGLG   +FDP  VV    L+LA G
Sbjct: 245 VFSQKFACPVSGFTIPEIEPRLFSFNNPFGACPACDGLGSKIYFDPMLVVPDERLTLAKG 304

Query: 304 AIRGW-DKRNQFYFQMIGSLAEYYGFSVDTPFSELTDEVKQVLLYGSDKDLVPFQYMNER 362
           AI  W    +++Y Q + S+ E++  S+ TP+ +L + V++ +L+GSD   +   Y ++ 
Sbjct: 305 AIAPWAGSTSKYYDQTLESICEHFDASMTTPWQDLPETVRKTILFGSDGSAITMTY-DDG 363

Query: 363 GKLVLKEHAFEGIIPNLERRYKETDSLAVREELAKYISNTTCPTCEGTRLRQEARHVKVG 422
            +      AFEGI+ NLERR++ETDS   R+EL+KY S+  C  C+G RL+ EA  VK+ 
Sbjct: 364 LRRYQTNKAFEGIVNNLERRFRETDSAWTRDELSKYQSSQPCEVCKGARLKPEALAVKIR 423

Query: 423 SKTLHEISHLPLAEARDYFETIQ--LTGHKAQVAEKILKEITSRLQFLINVGLDYLSLDR 480
            + + E + L +A A  +F  +   L     ++A +ILKEI  RL FL  VGL+YL+L R
Sbjct: 424 GRNISEAAELSIAGAGAWFSELNEHLRPKDREIAYRILKEINERLGFLNAVGLEYLTLSR 483

Query: 481 SAETLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLLQTLRQLRDIGNTVI 540
            + TLSGGE+QRIRLASQIGSGLTGV+YVLDEPSIGLHQRDNDRLL+TL++LRDIGNTV+
Sbjct: 484 GSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLHQRDNDRLLETLKRLRDIGNTVV 543

Query: 541 VVEHDEDAIRTADYVVDIGPGAGVHGGAIVAEGTPQQVTDNPASMTGDYLSGRKKIEVPK 600
           VVEHDEDAIR+ADY+VD+GPGAG HGG+++A+GTP++V  NP S+T  YL+G + + VP 
Sbjct: 544 VVEHDEDAIRSADYLVDMGPGAGQHGGSVIAQGTPEEVQKNPDSITAQYLNGTRFVPVPD 603

Query: 601 KRRQADPEKKLQVIGAKGNNLKDVSLELPVGLMTCITGVSGSGKSTLINDTLYTAAAKHL 660
            RR   P + L+V GA+ NNL++VS  +P+G  TC+TGVSG GKSTLI +TLY A A+ L
Sbjct: 604 TRRPGHPGQFLEVQGARANNLQNVSTRIPLGTFTCVTGVSGGGKSTLIIETLYKAVARKL 663

Query: 661 YGSTAEPAEHEEIIGLDHFDKVINVDQSPIGRTPRSNPATYTGLLTPIRELFAGVPEARS 720
            G+   PAEH+ ++GL+H DKVI++DQSPIGRTPRSNPATYTG  TP+R+ FAG+PEA++
Sbjct: 664 MGAREHPAEHDAVLGLEHLDKVIDIDQSPIGRTPRSNPATYTGAFTPMRDWFAGLPEAKA 723

Query: 721 RGYGPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCHGKRYNRETLEVHYKGK 780
           RGYGPGRFSFNVKGGRCEACQGDGVIK+EMHFLPD+YV CDVCHGKRYNRETLEV Y+ K
Sbjct: 724 RGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVTCDVCHGKRYNRETLEVTYRDK 783

Query: 781 SIYDVLQMTVEQAREFFDPVPVVARKLQTLVDVGLSYITLGQSATTLSGGEAQRVKLALE 840
           +I DVL MTVE+ +EFF  VP +  KL TL  VGL YI +GQ+ATTLSGGEAQRVKL+ E
Sbjct: 784 TIADVLDMTVEEGKEFFKAVPGIRDKLDTLERVGLGYIHIGQAATTLSGGEAQRVKLSKE 843

Query: 841 LSKRDTGRTLYILDEPTTGLHFADIEMLLKVLHRLADHGNTVVVIEHNLDVIKTADWLVD 900
           LS+R TGRTLYILDEPTTGLHFAD+E L++VLH L D GNTV+VIEHNL+VIKTADW++D
Sbjct: 844 LSRRATGRTLYILDEPTTGLHFADVEKLMEVLHALVDQGNTVLVIEHNLEVIKTADWIID 903

Query: 901 LGPEGGGGGGRIIAAGAPEAVVKVGESHTGRFLKPLL 937
           LGPEGG GGG I+A G PE V KV  S+TGR+L P L
Sbjct: 904 LGPEGGTGGGEIVAEGTPEDVAKVERSYTGRYLAPYL 940



 Score = 61.2 bits (147), Expect = 3e-13
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 9/123 (7%)

Query: 609 KKLQVIGAKGNNLKDVSLELPVGLMTCITGVSGSGKSTLINDTLYTAAAKHLYGSTA--- 665
           K + V GA+ +NLK+V ++LP   +  ITG+SGSGKS+L  DT+Y    +    S +   
Sbjct: 3   KYISVRGAREHNLKNVDVDLPRDELIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYA 62

Query: 666 ----EPAEHEEIIGLDHFDKVINVDQSPIGRTPRSNPATYTGLLTPIRELFA--GVPEAR 719
               E  +  ++  ++     I+++Q    + PRS   T T +   +R L+A  G+P + 
Sbjct: 63  RQFLELMQKPDVDSIEGLSPAISIEQKTTSKNPRSTVGTVTEIYDYMRLLWARVGIPYSP 122

Query: 720 SRG 722
           + G
Sbjct: 123 ATG 125