Pairwise Alignments

Query, 724 a.a., hypothetical protein from Dechlorosoma suillum PS

Subject, 996 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2

 Score = 66.2 bits (160), Expect = 7e-15
 Identities = 70/213 (32%), Positives = 90/213 (42%), Gaps = 18/213 (8%)

Query: 41  LLGVCQLQAGQPRLAVAPLEHCLALDPSHINAANALATALHLQGNNARACQVLR--LCLE 98
           L+G    ++GQ   A+A     L +DP H++A   LA +L + G+   A  V R  L L 
Sbjct: 251 LIGTLHHRSGQLESAIAAFHRVLTVDPGHLDARLLLADSLRVAGHWTEAVTVCRDGLALI 310

Query: 99  YRP---AAGECLLNLGRLLEMDGDHAGAMAAYGRVPAATPALSFPAGLRHATLLSRMGQT 155
             P        L NLG  L+  GD AGA+ AYG     TP L        A L    G  
Sbjct: 311 ADPDDRTRTALLANLGTALQSGGDAAGALEAYGAALRLTPDLP-EVHNNLARLHQETGNP 369

Query: 156 EDALALLRTLT---PEPADELRTLRQLQGEILLAAGRAPEAEALLAG----ATDARQQLL 208
           + A+  LR      P P    RTL  L    L+AAGR  EAE    G    A D  +   
Sbjct: 370 DAAIEDLRRAAAGRPLPLPLRRTLLSL----LIAAGRTAEAETEAFGIARTAPDDAELCF 425

Query: 209 WGMALAAQARW-EPARTALGEAWERAPGERRHW 240
              AL  Q  W + A   + +A   AP   R+W
Sbjct: 426 GIAALFLQGGWRDQALPYVRKAIRLAPDMPRNW 458



 Score = 41.2 bits (95), Expect = 3e-07
 Identities = 56/181 (30%), Positives = 70/181 (38%), Gaps = 16/181 (8%)

Query: 53  RLAVAPLEHCLALDPSHINAANALATALHLQGNNARACQVLRLCLEYRPAAGECLLNLGR 112
           RLA    +    L  +   A   LA    L+G    A  + R  L +RP   E L N   
Sbjct: 161 RLADGAAQPAQPLRQAQAEALGTLALVRMLEGRVEEAEALFRRALSHRPVLPEILGNHAS 220

Query: 113 LLEMDGDHAGAMAAYGRVPAATPALSFPAGLRH--ATLLSRMGQTEDALALL-RTLTPEP 169
           LL   G    A+    +  A  P L   AG  H   TL  R GQ E A+A   R LT +P
Sbjct: 221 LLARLGRDEEALEQAEQAVALRPRL---AGTLHLIGTLHHRSGQLESAIAAFHRVLTVDP 277

Query: 170 ADELRTLRQLQGEILLAAGRAPEAE-------ALLAGATD-ARQQLLWGMALAAQARWEP 221
                  R L  + L  AG   EA        AL+A   D  R  LL  +  A Q+  + 
Sbjct: 278 GH--LDARLLLADSLRVAGHWTEAVTVCRDGLALIADPDDRTRTALLANLGTALQSGGDA 335

Query: 222 A 222
           A
Sbjct: 336 A 336



 Score = 34.3 bits (77), Expect = 3e-05
 Identities = 51/194 (26%), Positives = 72/194 (37%), Gaps = 17/194 (8%)

Query: 13  LARGAPQAAREWLQANPPRPGDAAEHAFLLGVCQLQAGQPRLAVAPLEHCLALDPSHINA 72
           LA GA Q A+   QA        AE    L + ++  G+   A A     L+  P     
Sbjct: 162 LADGAAQPAQPLRQAQ-------AEALGTLALVRMLEGRVEEAEALFRRALSHRPVLPEI 214

Query: 73  ANALATALHLQGNNARACQVLRLCLEYRPAAGECLLNLGRLLEMDGDHAGAMAAYGRVPA 132
               A+ L   G +  A +     +  RP     L  +G L    G    A+AA+ RV  
Sbjct: 215 LGNHASLLARLGRDEEALEQAEQAVALRPRLAGTLHLIGTLHHRSGQLESAIAAFHRVLT 274

Query: 133 ATPALSFPAGLRHATLLSRMGQTEDALALLR---TLTPEPADELRTLRQLQGEILLAAGR 189
             P     A L  A  L   G   +A+ + R    L  +P D  RT       +L   G 
Sbjct: 275 VDPG-HLDARLLLADSLRVAGHWTEAVTVCRDGLALIADPDDRTRT------ALLANLGT 327

Query: 190 APEAEALLAGATDA 203
           A ++    AGA +A
Sbjct: 328 ALQSGGDAAGALEA 341



 Score = 27.7 bits (60), Expect = 0.003
 Identities = 51/158 (32%), Positives = 59/158 (37%), Gaps = 21/158 (13%)

Query: 554 AVAAALTRRAAEAGIGATRLHFSPGTTRPRYLARYRH-----VHAVLDTPLYHGHGTG-- 606
           A A AL R   EA  GA  +       R + LAR R        A  DT L    G    
Sbjct: 114 AAAEALRRTGHEAAGGAAAVQ----AHRAQALARLRRGQLAEAAAACDTALRLADGAAQP 169

Query: 607 ------ADALGMGTPVLSLQGEGFQARVGGSLVRALGLPQLAAESAEAYVATAIRLGRD- 659
                 A A  +GT  L    EG          RAL    +  E    + +   RLGRD 
Sbjct: 170 AQPLRQAQAEALGTLALVRMLEGRVEEAEALFRRALSHRPVLPEILGNHASLLARLGRDE 229

Query: 660 EAWRQA-LAADIR-RGCATDGPLGT-RRRVRQLEQAYA 694
           EA  QA  A  +R R   T   +GT   R  QLE A A
Sbjct: 230 EALEQAEQAVALRPRLAGTLHLIGTLHHRSGQLESAIA 267