Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 616 a.a., RNA polymerase subunit sigma-70 from Pseudomonas simiae WCS417

 Score =  687 bits (1774), Expect = 0.0
 Identities = 366/619 (59%), Positives = 452/619 (73%), Gaps = 20/619 (3%)

Query: 44  RKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAED 103
           +++R+K LI LG+E+G+LTYAE+NDHLP+D+ D EQ+E II   NDMGI VF+ AP  + 
Sbjct: 7   QQSRIKELIVLGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFEAAPDKDS 66

Query: 104 LLMSDNAPAVAD-DEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
           L+++D     AD DE   EEA AAL+ V+++ GRTTDPVRMYMREMGTVELLTREGEIEI
Sbjct: 67  LMLAD-----ADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEI 121

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPN------AAEE 216
           AKRIE+G++ ++ AI+  P T+  IL+   +V  E  R+ +V+ G IDP+      AAE 
Sbjct: 122 AKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTTEGGRLSDVLSGYIDPDDGIAPPAAEV 181

Query: 217 ELAAEEAVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKALV 276
               +    + DD+ ED D E  G +   V +    +   A +RF  +        KAL 
Sbjct: 182 PPPVDAKAAKADDDTEDDDAEASGDDEDEVESGPDPII--AAQRFGAVSDQMEITRKALK 239

Query: 277 SKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVG 336
             G  +K  +     ++   M I+   K  E L + VRS ++ +R +ER I +LCVR   
Sbjct: 240 KHGRANKQAIAELVALAELFMPIKLVPKQFEGLVERVRSALERLRAQERAIMQLCVRDAR 299

Query: 337 MPRPHFIKSFPGNEINLEWVEKEIAVAKG---YGPILTRTAPNIQEEQRKLLALQDHIGI 393
           MPR  F++ FPGNE++  W +   A+AKG   Y   + R  P+I   Q+KL AL+   G+
Sbjct: 300 MPRADFLRQFPGNEVDESWTD---ALAKGKAKYAEAIGRLQPDIIRCQQKLTALETETGL 356

Query: 394 PLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 453
            + ++KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM
Sbjct: 357 TIAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 416

Query: 454 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQE 513
           KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE
Sbjct: 417 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQE 476

Query: 514 TGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVD 573
            G EP P  L  +MEMPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIED+   +P+D
Sbjct: 477 MGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPID 536

Query: 574 AALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAK 633
            A    L+E T+++L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAK
Sbjct: 537 VATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAK 596

Query: 634 ALRKLRHPSRSDKLRSFLD 652
           ALRKLRHP+RS+ LRSFLD
Sbjct: 597 ALRKLRHPTRSEHLRSFLD 615