Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 616 a.a., RNA polymerase, sigma 70 (sigma D) factor from Pseudomonas putida KT2440

 Score =  670 bits (1728), Expect = 0.0
 Identities = 360/622 (57%), Positives = 444/622 (71%), Gaps = 26/622 (4%)

Query: 44  RKTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAED 103
           +++R+K LI  G+E+G+LTYAE+NDHLP+D+ D EQ+E II   NDMGI VF+ AP A+ 
Sbjct: 7   QQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDADA 66

Query: 104 LLMSDNAPAVAD-DEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI 162
           LL+++     AD DE   EEA AAL+ V+++ GRTTDPVRMYMREMGTVELLTREGEIEI
Sbjct: 67  LLLAE-----ADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEI 121

Query: 163 AKRIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPN----AAEEEL 218
           AKRIE+G++ ++ AI+  P T+  IL   ++V  E  R+ +V+ G IDP+    A  EE+
Sbjct: 122 AKRIEEGIREVMGAIAHFPGTVDYILGEYDRVTTEGGRLSDVLSGYIDPDDNIAAPTEEV 181

Query: 219 --------AAEEAVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGK 270
                   AA+E   + ++E E GDDEEE   G             A +RF  +      
Sbjct: 182 PIPGAKAAAAKEESDDDEEESESGDDEEEAESGPDPVV--------AAQRFGAVSDQLQA 233

Query: 271 AHKALVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQEL 330
             K L   G   K  ++  Q ++   M I+   K  E L + VR  ++ +R++ER I +L
Sbjct: 234 TSKVLKKNGRNHKESIEALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQL 293

Query: 331 CVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDH 390
           CVR   MPR  F++ FP NE +  W          +   L      I   Q+KL+ L+  
Sbjct: 294 CVRDARMPRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKNAAIVACQQKLIDLETE 353

Query: 391 IGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 450
            G+ + ++K+IN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNI
Sbjct: 354 TGLTVAEIKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNI 413

Query: 451 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 510
           GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+
Sbjct: 414 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQM 473

Query: 511 LQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTA 570
           LQE G EP P  L  +MEMPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIED+   +
Sbjct: 474 LQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQS 533

Query: 571 PVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQI 630
           P+D A    L+E T+++L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQI
Sbjct: 534 PIDVATVESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQI 593

Query: 631 EAKALRKLRHPSRSDKLRSFLD 652
           EAKALRKLRHP+RS+ LRSFLD
Sbjct: 594 EAKALRKLRHPTRSEHLRSFLD 615