Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 738 a.a., RNA polymerase sigma factor RpoD from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  808 bits (2086), Expect = 0.0
 Identities = 414/640 (64%), Positives = 507/640 (79%), Gaps = 6/640 (0%)

Query: 14  LKAKSSKAKEKALLESAGATQAA-TPVDVETRKTRLKTLIKLGKERGFLTYAEINDHLPD 72
           L+ K SKAKE+AL++  G  +   +  +   R+ RLKTLIKLGK RG+LT+ EINDHLPD
Sbjct: 102 LRMKISKAKERALMKEFGLDETVLSEEEARNRRERLKTLIKLGKTRGYLTHGEINDHLPD 161

Query: 73  DVVDAEQIESIITTFNDMGIQVFDEAPAAEDLLMSDNAPAVADDEEVEEEAEAALSTVDS 132
            +V+AE +E +++  NDMG+ V+++ P AE LL+++  P  A +EE EEEAEAALSTVDS
Sbjct: 162 KLVEAETLEVVVSLLNDMGVAVYEQTPDAETLLLNNTGPTAATEEEAEEEAEAALSTVDS 221

Query: 133 EFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTIAEILAMAE 192
           EFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIE GL  M+ AIS  P TIAEIL MAE
Sbjct: 222 EFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEGGLNDMMAAISESPATIAEILVMAE 281

Query: 193 KVEKEEMRIDEVIDGLIDPNAAEEELAAEEAVVEGDDEVEDGDDEEEGGEGAAVSASLLQ 252
            + + ++ I  V+DG  D + A++ +A E+      D+ ++ DD++  G   A++  L +
Sbjct: 282 DIREGKVVISTVVDGFADADEADDYVAEEDF-----DDYDEADDDDGKGGSKALTRKLEE 336

Query: 253 LKTDALERFATIKTLYGKAHKALVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDS 312
           LK +AL RF  ++TL+ K HK    +G     YLK Q  I+  LM+IRFT+K IE+LC +
Sbjct: 337 LKREALSRFDNMRTLFEKLHKIYDKEGYGTPGYLKTQTSITETLMSIRFTAKAIEKLCGT 396

Query: 313 VRSMVDSVRERERKIQELCVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTR 372
           +RS VD VR++ER+++ + V K GMP+  FIK FP N +NL+WVEK+ A  K +  ++ R
Sbjct: 397 MRSQVDDVRKKERELRRIIVDKCGMPQETFIKEFPPNLLNLKWVEKQAAAGKPWSVVIER 456

Query: 373 TAPNIQEEQRKLLALQDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAK 432
             P +QE Q+ L+ +Q  + +PL  LKDI+K+M+ GE+ +R AK+EM EANLRLVISIAK
Sbjct: 457 NIPPVQELQQGLINIQASVVVPLTHLKDIHKRMNQGESTSRDAKKEMIEANLRLVISIAK 516

Query: 433 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 492
           KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI
Sbjct: 517 KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRI 576

Query: 493 PVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIG 552
           PVHMIETINKMNRISRQ LQE G EPD + LA KMEMPE+KIRKI+KI+KEPISMETPIG
Sbjct: 577 PVHMIETINKMNRISRQHLQEFGFEPDASILAEKMEMPEDKIRKIMKIAKEPISMETPIG 636

Query: 553 DDDDSHLGDFIEDTATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHT 612
           DDDDSHLGDFIED A TAP++AA+ +GLREV KEILD+LTPREAKVLRMRFGIEM+TDHT
Sbjct: 637 DDDDSHLGDFIEDQANTAPIEAAMQAGLREVVKEILDSLTPREAKVLRMRFGIEMSTDHT 696

Query: 613 LEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLRSFLD 652
           LEEVGKQFDVTRERIRQIE+KA+RKL+HPSRSDKLRSF+D
Sbjct: 697 LEEVGKQFDVTRERIRQIESKAVRKLKHPSRSDKLRSFID 736