Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Serratia liquefaciens MT49

 Score =  692 bits (1785), Expect = 0.0
 Identities = 363/619 (58%), Positives = 457/619 (73%), Gaps = 23/619 (3%)

Query: 45  KTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDL 104
           +++LK L+  GKE+G+LTYAE+NDHLP+D+VD++QIE II   NDMGIQV +EAP A+DL
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVLEEAPDADDL 65

Query: 105 LMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 164
           L+++N+ +   DE+ EE A   LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 66  LLAENSNST--DEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 123

Query: 165 RIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEE-------- 216
           RIEDG+  +  +++  P  I  +L   ++VE  E R+ ++I G +DPNA E+        
Sbjct: 124 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAGEARLSDLITGFVDPNAEEDIAPTATHV 183

Query: 217 --ELAAEEAVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKA 274
             EL+ EE   + DD+ E+ +DEEE  +  ++   L      A ++FA ++  Y      
Sbjct: 184 GSELSTEE---QNDDDEEEDEDEEE--DDNSIDPEL------ARQKFADLRDQYEATRVV 232

Query: 275 LVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRK 334
           +   G    +  +   ++S      R   K  + L +S+R+M+D VR +ER I +LCV +
Sbjct: 233 IKKNGRSHASAAEEILKLSEVFKQFRLVPKQFDFLVNSMRTMMDRVRTQERIIMKLCVEQ 292

Query: 335 VGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIP 394
             MP+ +F+  F GNE +  W E  +A+AK +   L   A ++Q   +KL  +++  G+ 
Sbjct: 293 CKMPKKNFVTLFAGNETSTTWFEAALAMAKPWSEKLKDVAEDVQRSLQKLRQIEEETGLT 352

Query: 395 LKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 454
           ++ +KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
Sbjct: 353 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 412

Query: 455 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET 514
           AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE 
Sbjct: 413 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 472

Query: 515 GAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDA 574
           G EP P  LA +M MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT    P+D+
Sbjct: 473 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 532

Query: 575 ALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKA 634
           A    LR  T ++L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKA
Sbjct: 533 ATSESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 592

Query: 635 LRKLRHPSRSDKLRSFLDN 653
           LRKLRHPSRS+ LRSFLD+
Sbjct: 593 LRKLRHPSRSEVLRSFLDD 611