Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 615 a.a., RNA polymerase sigma factor RpoD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  688 bits (1776), Expect = 0.0
 Identities = 364/619 (58%), Positives = 452/619 (73%), Gaps = 19/619 (3%)

Query: 45  KTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDL 104
           +++LK L+  GKE+G+LTYAE+NDHLP+D+VD++QIE II   NDMGIQV +EAP A+DL
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65

Query: 105 LMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 164
           L+++N  +   DE+ EE A   LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 66  LLAENTTST--DEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 123

Query: 165 RIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEE-------- 216
           RIEDG+  +  +++  P  I  +L   ++VE EE R+ ++I G +DPNA EE        
Sbjct: 124 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEEMAPTATHV 183

Query: 217 --ELAAEEAVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKA 274
             EL+ E+   + D++ EDGDD+    + + +   L      A E+FA ++  Y      
Sbjct: 184 GSELSQEDLDDDEDEDEEDGDDDAADDDNS-IDPEL------AREKFAELRAQYVVTRDT 236

Query: 275 LVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRK 334
           + +KG       +   ++S      R   K  + L +S+R M+D VR +ER I +LCV +
Sbjct: 237 IKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 296

Query: 335 VGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIP 394
             MP+ +FI  F GNE +  W    IA+ K +   L   A  +Q   +KL  +++  G+ 
Sbjct: 297 CKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLRQIEEETGLT 356

Query: 395 LKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 454
           ++ +KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
Sbjct: 357 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 416

Query: 455 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET 514
           AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE 
Sbjct: 417 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 476

Query: 515 GAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDA 574
           G EP P  LA +M MPE+KIRK+ KI+KEPISMETPIGDD+DSHLGDFIEDT    P+D+
Sbjct: 477 GREPTPEELAERMLMPEDKIRKVPKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 536

Query: 575 ALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKA 634
           A    LR  T ++L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKA
Sbjct: 537 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 596

Query: 635 LRKLRHPSRSDKLRSFLDN 653
           LRKLRHPSRS+ LRSFLD+
Sbjct: 597 LRKLRHPSRSEVLRSFLDD 615