Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dadantii 3937

 Score =  680 bits (1755), Expect = 0.0
 Identities = 354/617 (57%), Positives = 453/617 (73%), Gaps = 19/617 (3%)

Query: 45  KTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDL 104
           +++LK L+  GKE+G+LTYAE+NDHLP+D++D++QIE II   NDMGIQV +EAP A+DL
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAPDADDL 65

Query: 105 LMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 164
           ++++N      DE+  E A   LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 66  MLAENTA----DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121

Query: 165 RIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEEELAA---- 220
           RIEDG+  +  +++  P  I  +L   ++VE  E R+ ++I G +DPNA EE+LA     
Sbjct: 122 RIEDGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITGFVDPNA-EEDLAPSTTP 180

Query: 221 EEAVVEGD----DEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKALV 276
           E A + GD    D+  + D+E++  +  ++   L      A ++F  ++  Y     ++ 
Sbjct: 181 ENAELAGDGMDDDDENEEDEEDDTDDDNSIDPEL------ARQKFTELRDQYEATRVSIK 234

Query: 277 SKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRKVG 336
           + G    T +    ++S      R   K  + L +++R+M+D VR +ER+I +LCV    
Sbjct: 235 AHGRSHPTAIDEINKLSEVFKQFRLVPKQFDLLVNNMRAMMDRVRAQERQIMKLCVELCK 294

Query: 337 MPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIPLK 396
           MP+ +F+  F GNE N +W +  +++ K +   L     ++    +KL  +++  G+ ++
Sbjct: 295 MPKKNFVTLFTGNETNRKWFDAALSMGKPWCEKLREVEDDVHRSLQKLQQIEEETGLTIE 354

Query: 397 DLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 456
            +KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV
Sbjct: 355 QVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAV 414

Query: 457 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGA 516
           DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE G 
Sbjct: 415 DKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGR 474

Query: 517 EPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDAAL 576
           EP P  LA +M MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT    P+D+A 
Sbjct: 475 EPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSAT 534

Query: 577 YSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKALR 636
              LR  T ++L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKALR
Sbjct: 535 SESLRSATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALR 594

Query: 637 KLRHPSRSDKLRSFLDN 653
           KLRHPSRS+ LRSFLD+
Sbjct: 595 KLRHPSRSEVLRSFLDD 611