Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 613 a.a., RNA polymerase, sigma 70 (sigma D) factor from Escherichia coli BL21

 Score =  686 bits (1769), Expect = 0.0
 Identities = 361/619 (58%), Positives = 451/619 (72%), Gaps = 21/619 (3%)

Query: 45  KTRLKTLIKLGKERGFLTYAEINDHLPDDVVDAEQIESIITTFNDMGIQVFDEAPAAEDL 104
           +++LK L+  GKE+G+LTYAE+NDHLP+D+VD++QIE II   NDMGIQV +EAP A+DL
Sbjct: 6   QSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAPDADDL 65

Query: 105 LMSDNAPAVADDEEVEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 164
           ++++N      DE+  E A   LS+V+SE GRTTDPVRMYMREMGTVELLTREGEI+IAK
Sbjct: 66  MLAENTA----DEDAAEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAK 121

Query: 165 RIEDGLKHMIQAISACPTTIAEILAMAEKVEKEEMRIDEVIDGLIDPNAAEE-------- 216
           RIEDG+  +  +++  P  I  +L   ++VE EE R+ ++I G +DPNA E+        
Sbjct: 122 RIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTATHV 181

Query: 217 --ELAAEEAVVEGDDEVEDGDDEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHKA 274
             EL+ E+   + D++ EDGDD+    + + +   L      A E+FA ++  Y      
Sbjct: 182 GSELSQEDLDDDEDEDEEDGDDDSADDDNS-IDPEL------AREKFAELRAQYVVTRDT 234

Query: 275 LVSKGSQDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVRERERKIQELCVRK 334
           + +KG    T  +   ++S      R   K  + L +S+R M+D VR +ER I +LCV +
Sbjct: 235 IKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQ 294

Query: 335 VGMPRPHFIKSFPGNEINLEWVEKEIAVAKGYGPILTRTAPNIQEEQRKLLALQDHIGIP 394
             MP+ +FI  F GNE +  W    IA+ K +   L   +  +    +KL  +++  G+ 
Sbjct: 295 CKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEEETGLT 354

Query: 395 LKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 454
           ++ +KDIN++MS GEAKARRAK+EM EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
Sbjct: 355 IEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK 414

Query: 455 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET 514
           AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK+NRISRQ+LQE 
Sbjct: 415 AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEM 474

Query: 515 GAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLGDFIEDTATTAPVDA 574
           G EP P  LA +M MPE+KIRK+LKI+KEPISMETPIGDD+DSHLGDFIEDT    P+D+
Sbjct: 475 GREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDS 534

Query: 575 ALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQFDVTRERIRQIEAKA 634
           A    LR  T ++L  LT REAKVLRMRFGI+MNTDHTLEEVGKQFDVTRERIRQIEAKA
Sbjct: 535 ATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKA 594

Query: 635 LRKLRHPSRSDKLRSFLDN 653
           LRKLRHPSRS+ LRSFLD+
Sbjct: 595 LRKLRHPSRSEVLRSFLDD 613