Pairwise Alignments

Query, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

Subject, 684 a.a., RNA polymerase sigma factor RpoD from Agrobacterium fabrum C58

 Score =  526 bits (1356), Expect = e-154
 Identities = 316/693 (45%), Positives = 422/693 (60%), Gaps = 65/693 (9%)

Query: 16  AKSSKAKEKALLESAGATQAATPVDVETRKTRLKTLIKLGKERGFLTYAEINDHLPDDVV 75
           A   K  E+A  E  GAT       ++     +K +IK  K+RG++T  E+N  LP + V
Sbjct: 2   ATKVKENEEAENERDGATDGPL---LDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEV 58

Query: 76  DAEQIESIITTFNDMGIQVFDEAPAAEDLLMSDNAPAVADDEEVEEEAEA---------A 126
            +EQIE  +   +DMGI V ++  A E       APA  D +   EE+E          A
Sbjct: 59  TSEQIEDTMAMLSDMGINVIEDEDAEEA------APAEDDGDSDNEESEGGELAPSGGTA 112

Query: 127 LSTVDSE--FGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMIQAISACPTTI 184
           L+T   +    RT DPVRMY+REMG+VELL+REGEI IAKRIE G + MI  +   P T 
Sbjct: 113 LATAKKKEPTDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTF 172

Query: 185 AEILAMAEKVEKEEMRIDEVID---GLIDPNA-------AEEELAAEEAVVE-------- 226
             ++   +++ +    + E+ID       P A       + E++ A+    E        
Sbjct: 173 QALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRRL 232

Query: 227 ----GDDEVED--GD-------DEEEGGEGAAVSASLLQLKTDALERFATIKTLYGKAHK 273
               GD++V D  GD       +E++     +++A   +L+   +E   TI   Y K  K
Sbjct: 233 RAPTGDEDVTDVGGDGLPPEEEEEDDDESNLSLAAMEAELRPQVMETLDTIADTYKKLRK 292

Query: 274 A--------LVSKGS----QDKTYLKLQQQISAELMNIRFTSKVIERLCDSVRSMVDSVR 321
                    L   G+    Q++ Y +L+ Q+   + ++      I+ L + +  +   + 
Sbjct: 293 LQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSLVEQLYDISKRLM 352

Query: 322 ERERKIQELCVRKVGMPRPHFIKSFPGNEINLEWVEKEIAVA-KGYGPILTRTAPNIQEE 380
           + E ++  L     G+ R  F++ + G E++  W++    +A +G+       +  I+E 
Sbjct: 353 QNEGRLLRLA-ESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEFAREESNTIREI 411

Query: 381 QRKLLALQDHIGIPLKDLKDINKQMSTGEAKARRAKREMTEANLRLVISIAKKYTNRGLQ 440
           ++++  L    GI + + + I   +  GE +AR AK+EM EANLRLVISIAKKYTNRGLQ
Sbjct: 412 RQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVISIAKKYTNRGLQ 471

Query: 441 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 500
           FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
Sbjct: 472 FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 531

Query: 501 NKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKILKISKEPISMETPIGDDDDSHLG 560
           NK+ R SRQ+L E G EP P  LA K+ MP EK+RK+LKI+KEPIS+ETP+GD++DSHLG
Sbjct: 532 NKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPVGDEEDSHLG 591

Query: 561 DFIEDTATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVGKQF 620
           DFIED     P+DAA+ + LRE T  +L +LTPRE +VLRMRFGI MNTDHTLEEVG+QF
Sbjct: 592 DFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQF 651

Query: 621 DVTRERIRQIEAKALRKLRHPSRSDKLRSFLDN 653
            VTRERIRQIEAKALRKL+HPSRS KLRSFLD+
Sbjct: 652 SVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 684