Pairwise Alignments

Query, 445 a.a., ribosomal RNA small subunit methyltransferase RsmB from Dechlorosoma suillum PS

Subject, 429 a.a., 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB from Escherichia coli ECRC98

 Score =  318 bits (814), Expect = 3e-91
 Identities = 179/420 (42%), Positives = 245/420 (58%), Gaps = 9/420 (2%)

Query: 32  LLASAAVAAVQAGRSLTEVLAQQAKGELGPTRAQAQDLAYGALRRYGWGEAVLAALLQKP 91
           + A A    V+ G+SL+ +L    +      +A  Q+L +G LR     + ++   + +P
Sbjct: 10  MAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALLQELCFGVLRTLSQLDWLINKSMARP 69

Query: 92  LPEPQ--LQSLLLCALYRLESRPEQSHTVVDQAVAAAATLAKGNFRGVINGVLRSYLRQR 149
           +   Q  +  L++  LY+L       H  + + V  A  + +   +G+INGVLR + RQ+
Sbjct: 70  MTGKQRTVHYLIMVGLYQLLYTRIPPHAALAETVEGAIAIKRPQLKGLINGVLRQFQRQQ 129

Query: 150 PELLARAAGKPSGAWWHPDWWLSRLRRAYPRDWEAIATAGNGQPPMTLRVNLARGSREEY 209
            ELLA         + HP W L RL++AYP  W++I  A N +PPM LR+N    SR+ +
Sbjct: 130 EELLAEF-NTSDARYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDTW 188

Query: 210 QARLDAAGIAAVPLGSA--ALLLQKPVPVDALPGFFDGFVSVQDWGAQRAAELLDARAGQ 267
            A LD AG+   P      A+ L+ P PV ALPGF DG+V+VQD  AQ     L  + G+
Sbjct: 189 LALLDEAGMKGFPHADYPDAVRLETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQNGE 248

Query: 268 RVLDACAAPGGKTAHILEQAG-VDLLALDMDGLRCRRVEENLSRLGLRAVVRAADARCPD 326
            +LD CAAPGGKT HILE A    ++A+D+D  R  RV +NL RLG++A V+  D R P 
Sbjct: 249 HILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPS 308

Query: 327 DWWDGRPFDRILADVPCSASGVVRRHPDSKWLRRETDIAQFARVQRQILEVLWPTLAVGG 386
            W   + FDRIL D PCSA+GV+RRHPD KWLRR+ DI + A++Q +IL+ +WP L  GG
Sbjct: 309 QWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGG 368

Query: 387 RLLYATCSVFPEENSQQVSAFLARHGDAR--RIGIDGADELQLLPGSEH-DGFYYALLEK 443
            L+YATCSV PEENS Q+ AFL R  DA     G       Q LPG+E  DGF+YA L K
Sbjct: 369 TLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGKQNLPGAEEGDGFFYAKLIK 428