Pairwise Alignments

Query, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 917 a.a., chemotaxis protein CheY from Pseudomonas simiae WCS417

 Score =  350 bits (898), Expect = e-100
 Identities = 253/686 (36%), Positives = 351/686 (51%), Gaps = 81/686 (11%)

Query: 564  ELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQRDYVGKIHNA 623
            EL  AR  A EA+  KS FLANMSHEIRTP+N I+G  HL  K+ELTP+Q DY+G I  +
Sbjct: 270  ELDLARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSELTPRQLDYLGTIEKS 329

Query: 624  AISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLFNVNAG 683
            A +LLGIIN+ILDFSKIEAGKL L+ +PF+L D+L +   +L   A+ K LEL+  V   
Sbjct: 330  ADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLLQDTLTILAPAAHAKQLELVSLVYRD 389

Query: 684  TPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQFWIEDMGIGMS 743
            TP  LVGDPLRL QILTNL+SNAIKFT  G I       D+  D V+L+  ++D GIG+S
Sbjct: 390  TPLALVGDPLRLKQILTNLISNAIKFTREGTIVARAMIEDEQEDSVQLRISVQDTGIGLS 449

Query: 744  REQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAW 803
             + +  LFQAF+QAD S +R+ GGTGLGL IS+RL+E MGG I  DST GEGS F  +  
Sbjct: 450  SQDVRALFQAFSQADNSLSRQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSEFWISLN 509

Query: 804  FGRAEELARPRTLP-ASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEALAQL 862
              +  +      LP A L G RV V +++  AR+ L   L    L      +   +L  L
Sbjct: 510  LPKTRD--DVEDLPSAPLLGHRVAVLENHELARQALQHQLEDCGLE----VTPFNSLESL 563

Query: 863  TEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTAYD--QEELRR-- 918
            T                     +G+++ H+ +QA+  A    V+ VTA D   E L +  
Sbjct: 564  T---------------------NGITSAHQTEQAIDLA----VLGVTANDIPPERLNQHL 598

Query: 919  -QTENLGICGILVKPVSASTLFDV-------------------------LVSLVDADNAP 952
               E+LG   +++ P +   LF+                          L+S   + + P
Sbjct: 599  WDLEHLGCKVLVLCPTTEQMLFNQSVPNPNSQLQAKPACTRKLRRALSDLISPRPSRSEP 658

Query: 953  ATPLHIAAPQTRIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPD 1012
              PL   AP       R+L  +DN  N  +   LL+ MGA+V     G  A++ +++   
Sbjct: 659  GEPLSSRAP-------RVLCVDDNPANLLLVQTLLEDMGARVRAVESGYAAIDAVKQ--- 708

Query: 1013 DSFDLVLMDLQMPHLDGYDATERLR---CQQRFAHLPILAMTAHAMPEERERCLAIGMND 1069
            D+FDLVLMD+QMP +DG  +TE +R    ++    LP++A+TAHAM  E+   L  GM+D
Sbjct: 709  DTFDLVLMDVQMPGMDGRQSTEAIRQWESERSGTPLPVVALTAHAMANEKRALLQSGMDD 768

Query: 1070 HLAKPIDPTALAATLARWYEERPGASAPAPTPAKDGTDALPPIPGVNTTQGLARMAGNQA 1129
            +L KPI    LA  + +W           P    DG      +P ++  +GL   AG   
Sbjct: 769  YLTKPISERQLAQVVLKW--TGLALRNQGPERVADGLGPGVQLPVLDHEEGLRLAAGKAD 826

Query: 1130 LYRRLLLRFVDTQTGTGEHIRQALADGDITAAEHLAHTLKGVAGNIGAEVLQQKATALDQ 1189
            L   +L   + +       I  A    D  A     H L G     G   L+      + 
Sbjct: 827  LAADMLAMLLASLEADRLAITIARDANDNNALIERVHRLHGATRYCGVPQLRAACHRAET 886

Query: 1190 ALRRNDGQGQ----KLESLRQRLAEE 1211
             L+++D + Q    +L+    RLA E
Sbjct: 887  LLKQDDAKAQHALDELDMAIARLASE 912



 Score = 38.5 bits (88), Expect = 3e-06
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 341 LLAVLAVLALGLGLGVVMAARLARRVAVPLDILAGDSERIGALDFSPRQYRRTGWREIDR 400
           L A L ++A+GL     +A R++R +  P+  +     ++   +   R     G +E+D+
Sbjct: 169 LFASLLLIAIGLICTAALALRISRTINSPIGQIKQAVAQLKDGNLETR-LPPLGSQELDQ 227

Query: 401 LAAAQEHMRETLQDATLRLEERVEQRTREL 430
           LA+    M ETLQ+A   L+  ++Q T ++
Sbjct: 228 LASGINRMAETLQNAQEELQHSIDQATEDV 257