Pairwise Alignments

Query, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 917 a.a., Sensor protein GacS from Pseudomonas putida KT2440

 Score =  362 bits (929), Expect = e-104
 Identities = 256/662 (38%), Positives = 345/662 (52%), Gaps = 34/662 (5%)

Query: 564  ELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELTPKQRDYVGKIHNA 623
            EL  AR  A EA+  KS FLANMSHEIRTP+N I+G  HL  K+E+TP+Q DY+  I  +
Sbjct: 271  ELDMARKEALEASRIKSEFLANMSHEIRTPLNGILGFTHLLQKSEMTPRQLDYLNTIEKS 330

Query: 624  AISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKANEKGLELLFNVNAG 683
            A +LLGIIN+ILDFSKIEAGKL L+ +PF+L D++ +   +L   A+ K LELL  +   
Sbjct: 331  ADNLLGIINEILDFSKIEAGKLVLDSIPFNLRDLIQDTLTILAPAAHAKQLELLSLIYRD 390

Query: 684  TPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVKLQFWIEDMGIGMS 743
            TPA LVGDPLRL QILTNLVSNAIKFT  G I +     D+  D  +L+  ++D GIG+S
Sbjct: 391  TPASLVGDPLRLKQILTNLVSNAIKFTREGTIVVRAMLEDEHEDCAQLRISVQDTGIGLS 450

Query: 744  REQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADSTLGEGSTFCFTAW 803
             + +  LFQAF+QAD S  R+ GGTGLGL IS+RL+E MGG I  DST GEGS F  +  
Sbjct: 451  PQDVRTLFQAFSQADNSLARQPGGTGLGLVISKRLIEQMGGEIGVDSTPGEGSQFWISLN 510

Query: 804  FGRAEELARPRTLPASLAGLRVLVADDNGAAREILGEALRHLDLRPDLVASGAEALAQLT 863
              +A + A     P  L G R  + D +  AR+ L   L    L   L AS  + L  + 
Sbjct: 511  LPKAHDDAEALP-PQPLLGRRAAIVDGHELARQALEHQLEDCGLSVSLFASYDQLLQGVQ 569

Query: 864  EMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTAYDQEELRRQTENL 923
                   P+    L   + +L      H  QQ L +     VV+    +Q        N 
Sbjct: 570  AASQAGLPFEFAVLGANLGNLSPEQLGHYHQQ-LERYHCQCVVLCPTTEQALYHPYLPN- 627

Query: 924  GICGILVKPVSASTLFDVLVSLVDADNAPATPLHIAAPQTRIDGMRILLAEDNEINQQIA 983
            G   +L KP     L  +L+ LV     P  PL   +        +IL  +DN  N  + 
Sbjct: 628  GHGQLLSKPTCTRKLRRLLLELVQ----PRRPLAEGSNPNGQRRPKILCVDDNAANLLLV 683

Query: 984  VELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQMPHLDGYDATERLRC---QQ 1040
              LL+ +GA+V    +G  AV+ ++   ++ FDLVLMD+QMP +DG   TE++R     Q
Sbjct: 684  KTLLEDLGAEVLAVNNGYAAVQAVQ---EELFDLVLMDVQMPGMDGRACTEQIRLWENTQ 740

Query: 1041 RFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAATLARWYEERPGASAPAPT 1100
                LPI+A+TAHAM  E+   L  GM+D+L KPI    LA  + +W     G S   P 
Sbjct: 741  SGNPLPIVALTAHAMANEKRALLHSGMDDYLTKPISERQLAQVVMKW----TGLSLGTPQ 796

Query: 1101 PAK-------DGTDALPPIPGVNTTQGLARMAGNQALYRRLLLRFVDTQTGTGEHIRQAL 1153
             A+       D    L P  G+    G A +A +      +LL  +DT     E IR A 
Sbjct: 797  QAQAELLTNGDELKVLDPEEGLRLAAGKADLAADML---SMLLASLDTDR---EAIRAAR 850

Query: 1154 ADGDITAAEHLAHTLKGVAGNIGAEVLQQKATALDQALRRNDGQGQ----KLESLRQRLA 1209
            A  D        H L G +   G   L+      +  L++++ Q Q    +L+S   RLA
Sbjct: 851  AADDRNGLIEQVHRLNGASRYCGVPQLRAACQRSETLLKQDNPQAQQALDELDSAISRLA 910

Query: 1210 EE 1211
             +
Sbjct: 911  AQ 912



 Score = 35.0 bits (79), Expect = 3e-05
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 341 LLAVLAVLALGLGLGVVMAARLARRVAVPLDIL--AGDSERIGALDFSPRQYRRTGWREI 398
           LL +LA LAL  GL   +A R++R +  P++ +  A +  + G L+    +    G  E+
Sbjct: 174 LLLILACLALS-GL---LALRMSRTINDPIERIKHAVNQLKDGHLE---ERLPTMGSHEL 226

Query: 399 DRLAAAQEHMRETLQDATLRLEERVEQRTREL 430
           D LA     M ETLQ+A   L+  ++Q T ++
Sbjct: 227 DELAHGINRMAETLQNAHEELQHSIDQATEDV 258