Pairwise Alignments

Query, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  395 bits (1014), Expect = e-113
 Identities = 282/866 (32%), Positives = 429/866 (49%), Gaps = 83/866 (9%)

Query: 387  PRQYRRTGWREIDRLAAAQEHMRETLQDAT--LRLEERVEQRTRELADAREESSRQLVLL 444
            P ++ R   + +   +      R T  D T  +  EER++    E+    E ++      
Sbjct: 296  PGRFLRVNGKPVFDASGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNN------ 349

Query: 445  QAIMDSMPNPVFFKDAEGRFLGCNRAYEDTFGVGRGQIVGKTVRELPFLSEEEKQELQAV 504
             +I++S+ + +   D  GR    NRA          ++VG  +  L  L     ++L   
Sbjct: 350  -SILESVDDGIVGIDLNGRATFVNRAAAKLLDFEPAELVGSDILPLMALDLHTAEKLY-- 406

Query: 505  SEAIIRDGIMMHRELQLPFADGLRHDTLYWANGFSREDGTP-------------GGMVGV 551
                         ++ L   + +R DT      F R DG+P             G  VGV
Sbjct: 407  -------------QILLRLTESIRDDTA----SFKRRDGSPLPVEYIASPVMDRGNQVGV 449

Query: 552  VV---DISERKLMEEELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTE 608
            V+   DI++R+L+E +LR A+  AE     KS FLA MSHEIRTPMN +IGM  L + T 
Sbjct: 450  VLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLATMSHEIRTPMNGVIGMTGLLLDTR 509

Query: 609  LTPKQRDYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLK 668
            L+ +QR +   I ++  SLL +INDILDFSK+EAGKL L+Y  F L  ++++V  +L  +
Sbjct: 510  LSEEQRHFAETIRDSGESLLTVINDILDFSKMEAGKLDLDYTEFELVPLVESVVDILAPR 569

Query: 669  ANEKGLELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDR 728
            A+ KG+E+   ++      +  DP RL Q+L NL  NA+KFTE+G +++    +D     
Sbjct: 570  AHAKGIEIASLIDPRLRMLVRSDPGRLRQVLMNLGGNAVKFTEKGGVSIEVSLLDGPDAP 629

Query: 729  VKLQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWA 788
               +F + D GIG+  E    LF  F+Q D ST R+YGGTGLGL+ISRRL E+MGG +  
Sbjct: 630  AMARFDVRDTGIGIPPEAQGRLFSMFSQVDASTARRYGGTGLGLAISRRLAELMGGEVGV 689

Query: 789  DSTLGEGSTFCFTAWFGRAEELARPRT-LPASLAGLRVLVADDNGAAREILGEALRHLDL 847
            +S +G GS F    W     EL  P++  P  L+G RVLV DDN    +++   LR   +
Sbjct: 690  ESAVGRGSRF----WITLPLELLAPQSAAPPDLSGHRVLVVDDNPVNCDVIERQLRAFGV 745

Query: 848  RPDLVASGAEALAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVM 907
                       + +LT       P+ V  +D QMP + G S + ++  A+P     R+V 
Sbjct: 746  EVHACLDAGSGMGELTRAAAMGTPWEVAVVDSQMPVVTG-SEMVRMIHAIPMLAGTRIV- 803

Query: 908  VTAYDQEELRRQTENLGICGILVKPVSASTLFDVLVSLVDADNAPATPLHIA----APQT 963
            VT+       +      I   L KP+  STL D +  ++        P   A    A + 
Sbjct: 804  VTSSQGMPADQNDGQPAIDAFLHKPLRQSTLLDTIGRVLGLTGPAERPADHAEEYKASEP 863

Query: 964  RIDGMRILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQAVELLERSPDDSFDLVLMDLQ 1023
                +RIL+AEDN +NQQ+A+ LL+ +G  V V GDG +A+E +   P   +D+VLMD+Q
Sbjct: 864  AAKRLRILVAEDNPVNQQVALGLLRKLGHTVDVVGDGAEALEAVRLLP---YDVVLMDVQ 920

Query: 1024 MPHLDGYDATERLRC-QQRFAHLPILAMTAHAMPEERERCLAIGMNDHLAKPIDPTALAA 1082
            MP +DG +AT  +R      A +PI+AMTA+AM  + + C   GM+ +++KPID   LA 
Sbjct: 921  MPEMDGLEATRAIRALPLAAAQVPIVAMTANAMRGDDQMCFDAGMDGYISKPIDRHKLAE 980

Query: 1083 TLARWY---EERPGASAPAPTPAK----DGTDALPPIPGVNTTQGLARMAGNQALYRRLL 1135
             LA++    E +P     AP  +K    D  DAL      +T                +L
Sbjct: 981  ALAKYSGAPETKPAEPPAAPQNSKAVDRDVLDALAADIEADTVV-------------EIL 1027

Query: 1136 LRFVDTQTGTGEHIRQALADGDITAAEHLAHTLKGVAGNIGAEVLQQKATALDQALRRND 1195
            ++F++       +       GD+      AHT+KG A ++G   ++    AL+QA R   
Sbjct: 1028 VKFMEDARTRQNNAAALAPTGDLEKVRREAHTIKGAAASLGLLAVRDACLALEQAAR--- 1084

Query: 1196 GQGQKLESLRQRLAEELAAVTGAIAA 1221
              G ++     RL +++ A+ G +AA
Sbjct: 1085 -AGGEVAPQIDRLHQDIEALPGLLAA 1109