Pairwise Alignments

Query, 1306 a.a., PAS domain S-box from Dechlorosoma suillum PS

Subject, 1231 a.a., two component sensor kinase/response regulator hybrid from Agrobacterium fabrum C58

 Score =  325 bits (832), Expect = 2e-92
 Identities = 207/572 (36%), Positives = 312/572 (54%), Gaps = 36/572 (6%)

Query: 551  VVVDISERKLMEEELRRARATAEEATEAKSLFLANMSHEIRTPMNAIIGMAHLAMKTELT 610
            +V D++E K+ EEEL+R  + AE A  AKS FLANMSHEIRTPMN ++GMA L  K++L 
Sbjct: 654  IVTDVTEMKVREEELQRLLSRAEAADRAKSEFLANMSHEIRTPMNGVLGMAELLAKSKLD 713

Query: 611  PKQRDYVGKIHNAAISLLGIINDILDFSKIEAGKLSLEYVPFSLEDVLDNVSGLLGLKAN 670
             +Q+ +   I  +  +LL IINDILDFSKIEAG++ L  VPF   + +++V  LL   A 
Sbjct: 714  TRQKTFTDIIVKSGNALLTIINDILDFSKIEAGQMKLRSVPFDPAEAVEDVVSLLSSAAL 773

Query: 671  EKGLELLFNVNAGTPAGLVGDPLRLNQILTNLVSNAIKFTERGQITLTTRPVDQAGDRVK 730
            EK +EL+  ++A     ++GD  R  QI+TN+V NA+KFTE G + +             
Sbjct: 774  EKDIELIVRIDASVSGKVIGDAGRFRQIVTNIVGNAVKFTETGHVLVELSAQSAEASESI 833

Query: 731  LQFWIEDMGIGMSREQLLHLFQAFTQADGSTTRKYGGTGLGLSISRRLVEMMGGTIWADS 790
                +ED GIG+  ++L  +F  F+Q DGS TR++ GTGLGL+I+  LV +  G I   S
Sbjct: 834  FSLRVEDSGIGIPVDKLETIFDKFSQVDGSATRRHEGTGLGLAITVGLVGLFDGKINVVS 893

Query: 791  TLGEGSTFCFTAWFGRAEELARPRTLPASLAGLRVLVADDNGAAREILGEALRHLDLRPD 850
             +G GS F     F   E       L  ++  +RVLV DDN   R IL E LR   +   
Sbjct: 894  EVGRGSAFEVDIPFQVMERRRDVPLLSVAIDDIRVLVIDDNDVNRRILTEQLRSWGIDGH 953

Query: 851  LVASGAEALAQLTEMQGGADPYRVLFLDWQMPDLDGVSTLHKLQQALPQAQWPRVVMVTA 910
             V +G   +A L E          + LD+ MP ++G+  + ++ +A  +     +V +T+
Sbjct: 954  AVENGPSGIAVLQEAASLGFAIDAIILDYHMPVMNGLDVVERI-RADKRFDDIAIVFLTS 1012

Query: 911  YDQEELRRQTENLGICGILVKPVSA----STLFDVLVSL------------------VDA 948
             D         +L +   L+KP  A    STLFDV+  +                     
Sbjct: 1013 MDVVGDETLFTDLSVQAHLMKPARARLLRSTLFDVVRDVRLKRIRQHPLAQGTGGEKARP 1072

Query: 949  DNAPATPLHIA-APQTRIDGMR-----ILLAEDNEINQQIAVELLQSMGAQVTVAGDGLQ 1002
            ++ PA     A AP T  +  R     +L+AEDN++NQ +  ++LQ  G +  + G+G +
Sbjct: 1073 ESRPAEKKQRAEAPATVPERSRPCLLDVLVAEDNDVNQIVFSQILQQAGLRFLIVGNGKR 1132

Query: 1003 AVELLERSPDDSFDLVLMDLQMPHLDGYDATERLRCQQRFA----HLPILAMTAHAMPEE 1058
            AV+  E   + +  L+LMD+ MP ++G+ AT+ +R  ++ A    H+P++ +TAH    +
Sbjct: 1133 AVQAWE---EYNPALILMDVSMPVMNGHQATQAIRAAEQAAGDSRHVPVIGVTAHTQEAD 1189

Query: 1059 RERCLAIGMNDHLAKPIDPTALAATLARWYEE 1090
            RERCL  GM+D+L+KPI P +L   +A+W  E
Sbjct: 1190 RERCLEAGMDDYLSKPISPESLEDKIAQWLGE 1221



 Score = 43.5 bits (101), Expect = 1e-07
 Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 6/136 (4%)

Query: 439 RQLVLLQAIMDSMPNPVFFKDAEGRFLGCNRAYEDTFGVGRGQIVGKTVREL-PFLSEEE 497
           R+  LL+A ++ +P  VF +D + R    N AY    G      +GKT  E+ P      
Sbjct: 274 RETWLLRAALEQLPVGVFLRDQDRRLTYANAAYNTFLGGNLADHIGKTETEMFPQNGPRF 333

Query: 498 KQELQAVSEAIIRDGIMMHRELQLPFADGLRHDTLYWANGFSREDGTPGGMVGVVVDISE 557
           +QE    +E I++ G  + R   +P+ DG     +      +  D     +VG V D+S 
Sbjct: 334 RQE----NERILQTGEAIERTGNMPWRDGGAVPVITRLGRVATPD-DEYYLVGSVTDVSL 388

Query: 558 RKLMEEELRRARATAE 573
            +  E+ L  A+A AE
Sbjct: 389 LQDREKALIAAQAEAE 404