Pairwise Alignments

Query, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS

Subject, 1358 a.a., DNA-directed RNA polymerase subunit beta from Xanthobacter sp. DMC5

 Score = 1229 bits (3181), Expect = 0.0
 Identities = 610/930 (65%), Positives = 744/930 (80%), Gaps = 8/930 (0%)

Query: 499  DIVESIKLLVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERAVKERLSQAE 558
            DI+  IK LVELR+G+GEIDDIDHLGNRRVRSVGEL ENQ+R GL+R+ERA+KER+S  +
Sbjct: 432  DILSVIKTLVELRDGKGEIDDIDHLGNRRVRSVGELMENQYRVGLLRMERAIKERMSSVD 491

Query: 559  SDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERA 618
             D +MP DLINAKP++AA++EFFGSSQLSQFMDQTNPLSEITHKRR+SALGPGGLTRERA
Sbjct: 492  IDTVMPQDLINAKPVAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLSALGPGGLTRERA 551

Query: 619  GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNSYGFLETPYRKVVDGKVTDQI 678
            GFEVRDVHPTHYGR+CPIETPEGPNIGLINSLA FAR N YGF+E PYR+VVD KVTD++
Sbjct: 552  GFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFIEAPYRRVVDSKVTDEV 611

Query: 679  EYLSAIEEGAYVVAQANAALGADGTLVDELVTCREKGETILAEPSRVQYMDVAPGQIVSV 738
             YLSA+EEG Y VAQAN  L  DG   ++L+ CR  G+ +L  P RV +MDV+P Q+VSV
Sbjct: 612  VYLSAMEEGKYYVAQANIPLDKDGRFEEDLIVCRHAGDVLLVSPDRVDFMDVSPKQLVSV 671

Query: 739  AASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGTAVQALRGGV 798
            AA+LIPFLE+DDANRALMG+NMQRQAVP +R + PLVGTG+E  VA DSG A+ A R GV
Sbjct: 672  AAALIPFLENDDANRALMGSNMQRQAVPLVRSQAPLVGTGMEAVVARDSGAAIAARRTGV 731

Query: 799  VDYVDASRVVVRVHDDETVPGEVGVDIYNLTKYTRSNQNTNINQRPLVKMGDIIAKGDVV 858
            +D VDA+R+V+R   +E  P + GVDIY L K+ RSNQ+T INQRPLV++GD + +GD++
Sbjct: 732  IDQVDATRIVIRA-TEEADPSKSGVDIYRLMKFQRSNQSTCINQRPLVRVGDQVKRGDII 790

Query: 859  ADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELTVVARDT 918
            ADG ST+ GELALG+N+L+AFMPWNGYNFEDSIL+SE +V ED +TSIHIEE   +ARDT
Sbjct: 791  ADGPSTELGELALGRNVLVAFMPWNGYNFEDSILLSENIVKEDVFTSIHIEEFECMARDT 850

Query: 919  KLGPEEITRDIASLGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLR 978
            KLGPEEITRDI ++ E  L  LDE+G+VYIGAEV AGD+LVGK+TPKGE+ +TPEEKLLR
Sbjct: 851  KLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGESPMTPEEKLLR 910

Query: 979  AIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERDKRAQSIIDDHLRGYKQDLADQ 1038
            AIFGEKA+DV+DTSLR+P G  GT+++V+VF R G+++D+RA +I  + +    +D  D+
Sbjct: 911  AIFGEKAADVRDTSLRLPPGTTGTIVEVRVFNRHGVDKDERALAIEREEIERLAKDRDDE 970

Query: 1039 MRIVERDTFARVGRLITGKPANGGPKKLAKGTVVTQEYLDGIDPHNWFDVRMADEEVAQQ 1098
              I++R+ + R+  ++ GK A  GPK   K T VT+E L       W+   +AD+ +  +
Sbjct: 971  QAILDRNVYGRLTEILDGKVAIAGPKGFKKETAVTREILGEYPRSQWWLFAVADDAIMAE 1030

Query: 1099 LEQLKESLEQTRKDFDIAFEEKRKKLTQGDELPPGVQKMVKVYVAVKRRLQPGDKMAGRH 1158
            LE ++   + ++K  +  F +K +KL +GDELPPGV KMVKV+VAVKR++QPGDKMAGRH
Sbjct: 1031 LEAIRAQYDDSKKRLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRKIQPGDKMAGRH 1090

Query: 1159 GNKGVVSRIVPVEDMPYMADGRPVDIVLNPLGVPSRMNVGQILEVHLGWAAKGLGYKI-- 1216
            GNKGVVSRIVPVEDMP++ DG  VDIVLNPLGVPSRMNVGQILE HLGWA  GLG ++  
Sbjct: 1091 GNKGVVSRIVPVEDMPFLEDGTNVDIVLNPLGVPSRMNVGQILETHLGWACAGLGRQVAA 1150

Query: 1217 -GDMLQAGAKAAEVRKFLEEIYNSEGKKENLNELNDQEIMELAGNLTTGVPFATPVFDGA 1275
              +   A      VR  LE IY     KE +++L D E+ ELA NL  GVP ATPVFDGA
Sbjct: 1151 AAEAYYARQDLKPVRDRLETIYG----KEEIDQLKDSELPELAENLRKGVPMATPVFDGA 1206

Query: 1276 DEAEIKAMLRLAGMPESGQITLHDGRTGDAFERQVTVGYMHYLKLHHLVDDKMHARSTGP 1335
             EA+I+  L  AG+  SGQ TL DGRTG+ F+R+VTVGY++ LKLHHLVDDK+HARS GP
Sbjct: 1207 HEADIEQELERAGLDRSGQSTLFDGRTGEPFDRKVTVGYIYMLKLHHLVDDKIHARSIGP 1266

Query: 1336 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENIVK 1395
            YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTVKSDDV GRTKVYE IV+
Sbjct: 1267 YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKVYEAIVR 1326

Query: 1396 GEHKIDAGMPESFNVLVKEIRSLAIDIDLE 1425
            GE   ++G+PESFNVLVKE+RSL +++DLE
Sbjct: 1327 GEDTFESGIPESFNVLVKEMRSLGLNVDLE 1356



 Score =  415 bits (1067), Expect = e-119
 Identities = 214/426 (50%), Positives = 291/426 (68%), Gaps = 8/426 (1%)

Query: 1   MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSI 60
           M  ++T +KRIRK F K   V ++P L+  Q  SY  FLQ E P   R + GLQA F S+
Sbjct: 1   MAQTFTGRKRIRKFFGKIKEVAEMPNLIEVQKASYDQFLQIEEPKGGRDDDGLQAVFKSV 60

Query: 61  FPIVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPDT---- 116
           FPI   SG A LEFV Y+   P +DV EC+QRG+TFA+ L+  +RL++ D + PDT    
Sbjct: 61  FPISDFSGAAMLEFVRYEFEPPKYDVDECRQRGMTFAAPLKVTLRLIVFDVD-PDTGAKS 119

Query: 117 VKEVKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFS 176
           VK++KEQ+VY G+IPLMT  G+F++NGTERVIVSQ+HRSPGVFF+HD+GKTHSSGKLLF+
Sbjct: 120 VKDIKEQDVYTGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA 179

Query: 177 ARVIPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLL 236
           AR+IPYRGSWLD EFD KDI++ R+DRRRK+PVT+LL A+GL +E+IL+ F+E   ++  
Sbjct: 180 ARIIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLLYALGLDSEEILSTFYEKIPYERA 239

Query: 237 KNGADFTLVPERLRGETARFDFCD-KAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDF 295
           K G      P+R++G  A  D  D   G+V++   K++T +  R L   G+K + + D+ 
Sbjct: 240 KGGWRMPFDPKRMKGYKAVSDLVDADTGEVVLEAGKKLTVRAARQLAEKGLKFLKISDEE 299

Query: 296 LVGRVIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTL 355
           +VG+ I  +++D  SGE+ A A DEITE  L  L EAG  E   L  + ++ GA+I NTL
Sbjct: 300 MVGQYIAEDLVDIASGEIHAEAGDEITEKTLKLLEEAGYNEIPILDIDHVNTGAYIRNTL 359

Query: 356 RADDTATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGR 415
            AD   T++ A   IYR+MRPGEPPT ++ + +F+ LF+  +RYDLS VGR+K N R+  
Sbjct: 360 AADKNVTREDALFDIYRVMRPGEPPTLDSAQAMFHSLFFDPERYDLSAVGRVKMNMRLDL 419

Query: 416 --PDVV 419
             PD V
Sbjct: 420 DCPDTV 425