Pairwise Alignments

Query, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS

Subject, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

 Score = 1629 bits (4218), Expect = 0.0
 Identities = 879/1444 (60%), Positives = 1037/1444 (71%), Gaps = 108/1444 (7%)

Query: 1    MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSI 60
            M YSYTEKKRIRK F+K   V+DVP+LLA QL+SY  FLQA     + R+ GL AAF S+
Sbjct: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60

Query: 61   FPIVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPD-TVKE 119
            FPI+S+SGNA LE+V Y+L EPAFDVKEC  RG+T+A  LR KVRL+I D+E+ +  +K+
Sbjct: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD 120

Query: 120  VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV 179
            +KEQEVYMGEIPLMT  G+FVINGTERVIVSQLHRSPGVFF+HDRGKTHSSGKLL+SAR+
Sbjct: 121  IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI 180

Query: 180  IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKNG 239
            IPYRGSWLDFEFDPKD +F R+DRRRK+P + LL+A+G T EQ+L  F+  + F L    
Sbjct: 181  IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET 240

Query: 240  ADFTLVPERLRGETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVGR 299
                L+  RLRGE A  D  D                                       
Sbjct: 241  LKLELIASRLRGEIAVLDIQD--------------------------------------- 261

Query: 300  VIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTLRADD 359
                     + G+VI  A   IT   + ++ +AG+ E +      L R            
Sbjct: 262  ---------EKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLGR------------ 300

Query: 360  TATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDVV 419
            T  K     A   ++   E  TE   EIL                       +I +  VV
Sbjct: 301  TTAKVIVHPATGEIL--AECNTELNTEIL----------------------AKIAKAQVV 336

Query: 420  EYKVTIKNAPHKTEALAKAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTL--- 476
              +    N       ++  +   + +NQ    E L E+ Y      E  T++AA TL   
Sbjct: 337  RIETLYTNDIDCGPFISDTLKIDSTSNQ---LEALVEI-YRMMRPGEPPTKDAAETLFNN 392

Query: 477  ------AAQLKALG--------ANVEVREQLTLSPRDIVESIKLLVELRNGRGEIDDIDH 522
                     L A+G           E+     L   DIV  +K LV++RNG+G +DDIDH
Sbjct: 393  LFFSPERYDLSAVGRMKFNRRIGRTEIEGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDH 452

Query: 523  LGNRRVRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAKPISAAIKEFFG 582
            LGNRRVR VGE+AENQFR GLVRVERAVKERLS AES+ LMP DLINAKP++AA+KEFFG
Sbjct: 453  LGNRRVRCVGEMAENQFRVGLVRVERAVKERLSMAESEGLMPQDLINAKPVAAAVKEFFG 512

Query: 583  SSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 642
            SSQLSQFMDQ NPLSEITHKRRV ALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP
Sbjct: 513  SSQLSQFMDQNNPLSEITHKRRVYALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGP 572

Query: 643  NIGLINSLALFARTNSYGFLETPYRKVVDGKVTDQIEYLSAIEEGAYVVAQANAALGADG 702
            NIGLINSLA +ARTN YGFLE+PYR V D  VTD+I +LSAIEE  +V+AQA+A +    
Sbjct: 573  NIGLINSLAAYARTNQYGFLESPYRVVKDALVTDEIVFLSAIEEADHVIAQASATMNDKK 632

Query: 703  TLVDELVTCREKGETILAEPSRVQYMDVAPGQIVSVAASLIPFLEHDDANRALMGANMQR 762
             LVDELV  R   E  +  P  V  MDV+P Q+VSVAASLIPFLEHDDANRALMG+NMQR
Sbjct: 633  VLVDELVAVRHLNEFTVKAPEDVTLMDVSPKQVVSVAASLIPFLEHDDANRALMGSNMQR 692

Query: 763  QAVPCLRPEKPLVGTGIERTVAVDSGTAVQALRGGVVDYVDASRVVVRVHDDETVPGEVG 822
            QAVP LR +KPLVGTG+ER VA DSG  V A RGGV+D VDASR+VVRV DDE   GE G
Sbjct: 693  QAVPTLRADKPLVGTGMERNVARDSGVCVVARRGGVIDSVDASRIVVRVADDEVETGEAG 752

Query: 823  VDIYNLTKYTRSNQNTNINQRPLVKMGDIIAKGDVVADGASTDKGELALGQNMLIAFMPW 882
            VDIYNLTKYTRSNQNT INQRPLV  GD + + D++ADG STD GELALGQNM IAFM W
Sbjct: 753  VDIYNLTKYTRSNQNTCINQRPLVSKGDRVQRSDIMADGPSTDMGELALGQNMRIAFMAW 812

Query: 883  NGYNFEDSILISERVVAEDRYTSIHIEELTVVARDTKLGPEEITRDIASLGEVQLSRLDE 942
            NG+NFEDSI +SERVV EDR+T+IHI+ELT VARDTKLGPEEIT DI ++GE  L++LDE
Sbjct: 813  NGFNFEDSICLSERVVQEDRFTTIHIQELTCVARDTKLGPEEITADIPNVGEAALNKLDE 872

Query: 943  SGVVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIAGT 1002
            +G+VY+GAEV AGD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVP+G  GT
Sbjct: 873  AGIVYVGAEVGAGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGT 932

Query: 1003 VIDVQVFTREGIERDKRAQSIIDDHLRGYKQDLADQMRIVERDTFARVGRLITGKPANGG 1062
            VIDVQVFTR+G+ERD RA SI    L   ++DL ++ RIVE  TF R+   + G  A GG
Sbjct: 933  VIDVQVFTRDGVERDARALSIEKTQLDEIRKDLNEEFRIVEGATFERLRSALVGHKAEGG 992

Query: 1063 PKKLAKGTVVTQEYLDGIDPHNWFDVRMADEEVAQQLEQLKESLEQTRKDFDIAFEEKRK 1122
               L KG  +T E LDG++   WF +RMA++ + +QLE+ +  +   R+  D  FE+K++
Sbjct: 993  -AGLKKGQDITDEILDGLEHGQWFKLRMAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKR 1051

Query: 1123 KLTQGDELPPGVQKMVKVYVAVKRRLQPGDKMAGRHGNKGVVSRIVPVEDMPYMADGRPV 1182
            KL QGD+L PGV K+VKVY+A++RR+QPGDKMAGRHGNKGVVS I+PVEDMP+ A+G PV
Sbjct: 1052 KLQQGDDLAPGVLKIVKVYLAIRRRIQPGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPV 1111

Query: 1183 DIVLNPLGVPSRMNVGQILEVHLGWAAKGLGYKIGDMLQAGAKAAEVRKFLEEIYNS-EG 1241
            D+VLNPLGVPSRMNVGQILE HLG AAKGLG KI  M++   K A++RKFL EIYN   G
Sbjct: 1112 DVVLNPLGVPSRMNVGQILETHLGLAAKGLGEKINRMIEEQRKVADLRKFLHEIYNEIGG 1171

Query: 1242 KKENLNELNDQEIMELAGNLTTGVPFATPVFDGADEAEIKAMLRLAGMPESGQITLHDGR 1301
            + E L+  +DQEI++LA NL  GVP ATPVFDGA E+EIKAML+LA +PESGQ+ L DGR
Sbjct: 1172 RNEELDTFSDQEILDLAKNLRGGVPMATPVFDGAKESEIKAMLKLADLPESGQMQLFDGR 1231

Query: 1302 TGDAFERQVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVW 1361
            TG+ FER VTVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVW
Sbjct: 1232 TGNKFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVW 1291

Query: 1362 ALEAYGASYVLQEMLTVKSDDVNGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSLAID 1421
            ALEAYGA+Y LQEMLTVKSDDVNGRTK+Y+NIV G+H+++ GMPESFNVL+KEIRSL ID
Sbjct: 1292 ALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGID 1351

Query: 1422 IDLE 1425
            IDLE
Sbjct: 1352 IDLE 1355