Pairwise Alignments
Query, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS
Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta (NCBI) from Escherichia coli BW25113
Score = 1313 bits (3397), Expect = 0.0
Identities = 664/977 (67%), Positives = 796/977 (81%), Gaps = 25/977 (2%)
Query: 461 SRAAAENLTE-----EAAHTLAAQLKALGANVEVREQLT----LSPRDIVESIKLLVELR 511
+R AAE+L E E + L+A + +RE++ LS DI++ +K L+++R
Sbjct: 377 TREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIR 436
Query: 512 NGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERAVKERLSQAESDNLMPHDLINAK 571
NG+GE+DDIDHLGNRR+RSVGE+AENQFR GLVRVERAVKERLS + D LMP D+INAK
Sbjct: 437 NGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAK 496
Query: 572 PISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYG 631
PISAA+KEFFGSSQLSQFMDQ NPLSEITHKRR+SALGPGGLTRERAGFEVRDVHPTHYG
Sbjct: 497 PISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYG 556
Query: 632 RVCPIETPEGPNIGLINSLALFARTNSYGFLETPYRKVVDGKVTDQIEYLSAIEEGAYVV 691
RVCPIETPEGPNIGLINSL+++A+TN YGFLETPYRKV DG VTD+I YLSAIEEG YV+
Sbjct: 557 RVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVI 616
Query: 692 AQANAALGADGTLVDELVTCREKGETILAEPSRVQYMDVAPGQIVSVAASLIPFLEHDDA 751
AQAN+ L +G V++LVTCR KGE+ L +V YMDV+ Q+VSV ASLIPFLEHDDA
Sbjct: 617 AQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDA 676
Query: 752 NRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGTAVQALRGGVVDYVDASRVVVRV 811
NRALMGANMQRQAVP LR +KPLVGTG+ER VAVDSG A RGGVV YVDASR+V++V
Sbjct: 677 NRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKV 736
Query: 812 HDDETVPGEVGVDIYNLTKYTRSNQNTNINQRPLVKMGDIIAKGDVVADGASTDKGELAL 871
++DE PGE G+DIYNLTKYTRSNQNT INQ P V +G+ + +GDV+ADG STD GELAL
Sbjct: 737 NEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELAL 796
Query: 872 GQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIHIEELTVVARDTKLGPEEITRDIAS 931
GQNM +AFMPWNGYNFEDSIL+SERVV EDR+T+IHI+EL V+RDTKLGPEEIT DI +
Sbjct: 797 GQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN 856
Query: 932 LGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDT 991
+GE LS+LDESG+VYIGAEV GD+LVGKVTPKGETQLTPEEKLLRAIFGEKASDVKD+
Sbjct: 857 VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDS 916
Query: 992 SLRVPSGIAGTVIDVQVFTREGIERDKRAQSIIDDHLRGYKQDLADQMRIVERDTFARVG 1051
SLRVP+G++GTVIDVQVFTR+G+E+DKRA I + L+ K+DL+++++I+E F+R+
Sbjct: 917 SLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIR 976
Query: 1052 RLITGKPANGGPKKLAKGTVVTQEYLDGIDPHNWFDVRMADEEVAQQLEQLKESLEQTRK 1111
++ GG V E LD + W ++ + DEE QLEQL E ++ +
Sbjct: 977 AVLVA----GG---------VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKH 1023
Query: 1112 DFDIAFEEKRKKLTQGDELPPGVQKMVKVYVAVKRRLQPGDKMAGRHGNKGVVSRIVPVE 1171
+F+ E KR+K+TQGD+L PGV K+VKVY+AVKRR+QPGDKMAGRHGNKGV+S+I P+E
Sbjct: 1024 EFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIE 1083
Query: 1172 DMPYMADGRPVDIVLNPLGVPSRMNVGQILEVHLGWAAKGLGYKIGDMLQAGAKAAEVRK 1231
DMPY +G PVDIVLNPLGVPSRMN+GQILE HLG AAKG+G KI ML+ + A++R+
Sbjct: 1084 DMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLRE 1143
Query: 1232 FLEEIYN---SEGKKENLNELNDQEIMELAGNLTTGVPFATPVFDGADEAEIKAMLRLAG 1288
F++ Y+ +K +L+ +D+E+M LA NL G+P ATPVFDGA EAEIK +L+L
Sbjct: 1144 FIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGD 1203
Query: 1289 MPESGQITLHDGRTGDAFERQVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKA 1348
+P SGQI L+DGRTG+ FER VTVGYM+ LKL+HLVDDKMHARSTG YSLVTQQPLGGKA
Sbjct: 1204 LPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKA 1263
Query: 1349 QFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVNGRTKVYENIVKGEHKIDAGMPESF 1408
QFGGQRFGEMEVWALEAYGA+Y LQEMLTVKSDDVNGRTK+Y+NIV G H+++ GMPESF
Sbjct: 1264 QFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMPESF 1323
Query: 1409 NVLVKEIRSLAIDIDLE 1425
NVL+KEIRSL I+I+LE
Sbjct: 1324 NVLLKEIRSLGINIELE 1340
Score = 504 bits (1297), Expect = e-146
Identities = 278/555 (50%), Positives = 371/555 (66%), Gaps = 24/555 (4%)
Query: 1 MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSI 60
M YSYTEKKRIRK F KR VLDVP+LL+ QL+S+ F++ + GL+AAF S+
Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56
Query: 61 FPIVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPD-TVKE 119
FPI S+SGN+ L++VSY+L EP FDV+ECQ RG+T+++ LR K+RLVI +REAP+ TVK+
Sbjct: 57 FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKD 116
Query: 120 VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV 179
+KEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ D+GKTHSSGK+L++AR+
Sbjct: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176
Query: 180 IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKNG 239
IPYRGSWLDFEFDPKD LF R+DRRRK+P T +L+A+ T EQIL FFE F++ N
Sbjct: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNK 236
Query: 240 ADFTLVPERLRGETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVGR 299
LVPERLRGETA FD + GKV V K +RITA+HIR L+ +K I VP +++ G+
Sbjct: 237 LQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGK 295
Query: 300 VIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTLRADD 359
V+ + ID+ +GE+I AN E++ LLAKL ++G +TL+TNDLD G +IS TLR D
Sbjct: 296 VVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDP 355
Query: 360 TATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDVV 419
T + +A V IYRMMRPGEPPT EA E LF LF+S+DRYDLS VGRMKFNR + R ++
Sbjct: 356 TNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIE 415
Query: 420 EYKVTIKNAPHKTEALAKAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTLAAQ 479
+ K+ + + K I G +G V +I + R+ E + L
Sbjct: 416 GSGILSKD--DIIDVMKKLIDIRNG--KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471
Query: 480 LKALGANVEVREQLTLSPRDIVESIKL------------LVELRNGRGEIDDIDHLGNRR 527
+A+ + + + TL P+D++ + + L + + + +I H RR
Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH--KRR 529
Query: 528 VRSVGELAENQFRAG 542
+ ++G + RAG
Sbjct: 530 ISALGPGGLTRERAG 544