Pairwise Alignments
Query, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS
Subject, 1342 a.a., DNA-directed RNA polymerase subunit beta from Dickeya dianthicola ME23
Score = 1308 bits (3385), Expect = 0.0
Identities = 651/941 (69%), Positives = 776/941 (82%), Gaps = 16/941 (1%)
Query: 488 EVREQLTLSPRDIVESIKLLVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVE 547
E+ LS DI++ +K L+++RNG+GE+DDIDHLGNRR+RSVGE+AENQFR GLVRVE
Sbjct: 413 EIEGSGILSKADIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVE 472
Query: 548 RAVKERLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSA 607
RAVKERLS + D LMP D+INAKPISAA+KEFFGSSQLSQFMDQ NPLSEITHKRR+SA
Sbjct: 473 RAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISA 532
Query: 608 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNSYGFLETPYR 667
LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL+++A+TN YGFLETPYR
Sbjct: 533 LGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYR 592
Query: 668 KVVDGKVTDQIEYLSAIEEGAYVVAQANAALGADGTLVDELVTCREKGETILAEPSRVQY 727
+V DG VTD+I YLSAIEEG YV+AQAN L +G ++ELVTCR KGE+ L +V Y
Sbjct: 593 RVRDGVVTDEIHYLSAIEEGNYVIAQANTNLDDEGHFIEELVTCRSKGESSLFSRDQVDY 652
Query: 728 MDVAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDS 787
MDV+ Q+VSV ASLIPFLEHDDANRALMGANMQRQAVP LR +KPLVGTG+ER VAVDS
Sbjct: 653 MDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDS 712
Query: 788 GTAVQALRGGVVDYVDASRVVVRVHDDETVPGEVGVDIYNLTKYTRSNQNTNINQRPLVK 847
G A RGG V YVDASR+V++V++DE PGE G+DIYNLTKYTRSNQNT INQ P V
Sbjct: 713 GVTAVAKRGGTVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVS 772
Query: 848 MGDIIAKGDVVADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSIH 907
+G+ + +GDV+ADG STD GELALGQNM +AFMPWNGYNFEDSIL+SERVV EDR+T+IH
Sbjct: 773 LGEPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIH 832
Query: 908 IEELTVVARDTKLGPEEITRDIASLGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPKGE 967
I+EL V+RDTKLGPEEIT DI ++GE LS+LDESG+VYIGAEV GD+LVGKVTPKGE
Sbjct: 833 IQELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGE 892
Query: 968 TQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERDKRAQSIIDDH 1027
TQLTPEEKLLRAIFGEKASDVKD+SLRVP+G++GT+IDVQVFTR+G+E+DKRA I +
Sbjct: 893 TQLTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQ 952
Query: 1028 LRGYKQDLADQMRIVERDTFARVGRLITGKPANGGPKKLAKGTVVTQEYLDGIDPHNWFD 1087
L+ K+DL ++++I+E FAR+ ++ GG V + LD + W +
Sbjct: 953 LKQAKKDLTEELQILEAGLFARIHDVLVA----GG---------VEADKLDKLPRERWLE 999
Query: 1088 VRMADEEVAQQLEQLKESLEQTRKDFDIAFEEKRKKLTQGDELPPGVQKMVKVYVAVKRR 1147
+ + DEE QLEQL E ++ + +F+ E KR+K+TQGD+L PGV K+VKVY+AVKR+
Sbjct: 1000 LGLTDEEKQNQLEQLAEQYDELKHEFEKKLEGKRRKITQGDDLAPGVLKIVKVYLAVKRQ 1059
Query: 1148 LQPGDKMAGRHGNKGVVSRIVPVEDMPYMADGRPVDIVLNPLGVPSRMNVGQILEVHLGW 1207
+QPGDKMAGRHGNKGV+S+I P+EDMPY +G PVDIVLNPLGVPSRMN+GQILE HLG
Sbjct: 1060 IQPGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGM 1119
Query: 1208 AAKGLGYKIGDMLQAGAKAAEVRKFLEEIY---NSEGKKENLNELNDQEIMELAGNLTTG 1264
AAKG+G KI ML+ + A++R+F++ Y N +K +LN +D+E++ LA NL G
Sbjct: 1120 AAKGIGDKINAMLKQQQEVAKLREFIQRAYDLGNDVRQKVDLNTFSDEEVLRLAENLKKG 1179
Query: 1265 VPFATPVFDGADEAEIKAMLRLAGMPESGQITLHDGRTGDAFERQVTVGYMHYLKLHHLV 1324
+P ATPVFDGA E EIK +L+L +P SGQITL DGRTG+ FER VTVGYM+ LKL+HLV
Sbjct: 1180 MPIATPVFDGAKENEIKELLKLGDLPTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLV 1239
Query: 1325 DDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVKSDDVN 1384
DDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTVKSDDVN
Sbjct: 1240 DDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVN 1299
Query: 1385 GRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSLAIDIDLE 1425
GRTK+Y+NIV G+H+++ GMPESFNVL+KEIRSL I+I+LE
Sbjct: 1300 GRTKMYKNIVDGDHRMEPGMPESFNVLLKEIRSLGINIELE 1340
Score = 504 bits (1297), Expect = e-146
Identities = 276/555 (49%), Positives = 371/555 (66%), Gaps = 24/555 (4%)
Query: 1 MTYSYTEKKRIRKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSI 60
M YSYTEKKRIRK F KR VLD+P+LL+ QL+S+ F++ + GL+AAF S+
Sbjct: 1 MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQD----PEGQYGLEAAFRSV 56
Query: 61 FPIVSHSGNARLEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPD-TVKE 119
FPI S+SGN+ L++VSY+L EP FDV+ECQ RG+TF++ LR K+RLVI +REAP+ TVK+
Sbjct: 57 FPIASYSGNSELQYVSYRLGEPVFDVQECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKD 116
Query: 120 VKEQEVYMGEIPLMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV 179
+KEQEVYMGEIPLMT G+FVINGTERVIVSQLHRSPGVFF+ D+GKTHSSGK+L++AR+
Sbjct: 117 IKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARI 176
Query: 180 IPYRGSWLDFEFDPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKNG 239
IPYRGSWLDFEFDPKD LF R+DRRRK+P T +L+A+ + E+IL FF+ +++ N
Sbjct: 177 IPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALSYSTEEILDLFFDKVVYEIHNNK 236
Query: 240 ADFTLVPERLRGETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVGR 299
LVPERLRGETA FD + GKV V K +RITA+HIR L+ GI+ I VP +++ G+
Sbjct: 237 LQMELVPERLRGETASFDI-EADGKVYVEKGRRITARHIRQLEKDGIERIEVPVEYIAGK 295
Query: 300 VIGHNIIDKDSGEVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRGAFISNTLRADD 359
V+ + +D+ +GEVIA AN E++ LLAKL +AG TL+TNDLD G ++S TLR D
Sbjct: 296 VLAKDYVDESTGEVIAMANMELSLDLLAKLSQAGHKRLDTLFTNDLDHGPYMSETLRVDP 355
Query: 360 TATKQAARVAIYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDVV 419
T + +A V IYRMMRPGEPPT EA E LF LF+S+DRYDLS VGRMKFNR + R ++
Sbjct: 356 TNDRLSALVEIYRMMRPGEPPTREAAETLFGNLFFSEDRYDLSAVGRMKFNRSLLREEIE 415
Query: 420 EYKVTIKNAPHKTEALAKAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTLAAQ 479
+ K + + K I G +G V +I + R+ E + L
Sbjct: 416 GSGILSK--ADIIDVMKKLIDIRNG--KGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRV 471
Query: 480 LKALGANVEVREQLTLSPRDIVESIKL------------LVELRNGRGEIDDIDHLGNRR 527
+A+ + + + TL P+D++ + + L + + + +I H RR
Sbjct: 472 ERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITH--KRR 529
Query: 528 VRSVGELAENQFRAG 542
+ ++G + RAG
Sbjct: 530 ISALGPGGLTRERAG 544