Pairwise Alignments
Query, 1427 a.a., DNA-directed RNA polymerase, beta subunit from Dechlorosoma suillum PS
Subject, 1291 a.a., DNA-directed RNA polymerase, beta subunit from Echinicola vietnamensis KMM 6221, DSM 17526
Score = 899 bits (2322), Expect = 0.0
Identities = 493/1026 (48%), Positives = 661/1026 (64%), Gaps = 92/1026 (8%)
Query: 433 EALAKAIAEFTGANQGTVQEILNELQYGSRAAAENLTEEAAHTLAAQLKALGANVEVREQ 492
E + + + ++ T +E+++ L + + +L E + + K LG ++E E+
Sbjct: 325 EVIYRQLRNTEAPDEATAREVIHGLFFSDKRY--DLGEVGRYRIN---KKLGLDIEA-EK 378
Query: 493 LTLSPRDIVESIKLLVELRNGRGEIDDIDHLGNRRVRSVGELAENQFRAGLVRVERAVKE 552
+ L+ DI+ +K L+ L N + +DDIDHL NRRVR+VGE +QF GL R+ R ++E
Sbjct: 379 IVLTTEDIINIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLYSQFGVGLARMARTIRE 438
Query: 553 RLSQAESDNLMPHDLINAKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGG 612
R++ ++++ P DLINA+ +S+ I FFG++QLSQFMDQTNPL+E+THKRR+SALGPGG
Sbjct: 439 RMNVRDNEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAELTHKRRLSALGPGG 498
Query: 613 LTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALFARTNSYGFLETPYRKVVDG 672
L+RERAGFEVRDVH THYGR+C IETPEGPNIGLI+SL + A+ N+ GFLETPYRKV +G
Sbjct: 499 LSRERAGFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNAMGFLETPYRKVKEG 558
Query: 673 KV---TDQIEYLSAIEEGAYVVAQANAALGADGTLVDELVTCREKGETILAEPSRVQYMD 729
K + I +L+A EE +AQANA L DG+ V++ V R +G+ + EP + YMD
Sbjct: 559 KAGMEAEDIVFLTAEEEDNNNIAQANAPLETDGSFVNDRVKARYEGDFPVLEPKEISYMD 618
Query: 730 VAPGQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT 789
VAP QIVSVAASLIPFLEHDDANRALMG+NMQRQAVP L+ E P+VGTG+E AVDS +
Sbjct: 619 VAPNQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAESPIVGTGLEAKAAVDSRS 678
Query: 790 AVQALRGGVVDYVDASRVVVR--VHDDE-TVPGEVGVDIYNLTKYTRSNQNTNINQRPLV 846
+ A GVVD+VDA ++V++ + DDE V Y+L K+ R+NQ+T IN PLV
Sbjct: 679 LIIAEADGVVDFVDAKKIVIKYDLSDDELLVNFSDEYKSYDLIKFRRTNQDTTINLTPLV 738
Query: 847 KMGDIIAKGDVVADGASTDKGELALGQNMLIAFMPWNGYNFEDSILISERVVAEDRYTSI 906
G + KG V+ +G ST++GELALG+N+ +A+MPW GYNFED+I+ISERVV ED +TSI
Sbjct: 739 LKGQRVTKGQVLVEGYSTNQGELALGKNLKVAYMPWQGYNFEDAIVISERVVREDIFTSI 798
Query: 907 HIEELTVVARDTKLGPEEITRDIASLGEVQLSRLDESGVVYIGAEVEAGDVLVGKVTPKG 966
H+EE + RDTK G EE+T +I ++ E + LDE+G++ IGAE++ GD+++GK+TPKG
Sbjct: 799 HVEEFQLEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRIGAELKEGDIIIGKITPKG 858
Query: 967 ETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGIAGTVIDVQVFTREGIERDKRAQSIIDD 1026
ET TPEEKLLRAIFG+KA DVKD SL+ + G VI+ ++F+R ++DK ++
Sbjct: 859 ETDPTPEEKLLRAIFGDKAGDVKDASLKASPSLNGVVIETKLFSRP--KKDKELRAKAKA 916
Query: 1027 HLRGYKQDLADQMRIVERDTFARVGRLITGKPANG-----GPKKLAKGTVVTQEYLDG-- 1079
+ KQ ++ V ++ ++ G + G G + ++KG + ++
Sbjct: 917 EVEKLKQAYTKELLGVRAKMINKLVSILDGMTSLGVKHKFGDEIISKGVKFNHQNIENNL 976
Query: 1080 -------IDPHNW-------------FDVRMADEEVAQQLEQLKESLEQTRKDFDIAFEE 1119
D N+ D DE ++QL ++ TR + F+
Sbjct: 977 FPAKNPYRDESNYNVPEEANLISDIILDDWTEDEHANSLIQQLVKNYTNTRNEISGRFKR 1036
Query: 1120 KRKKLTQGDELPPGVQKMVKVYVAVKRRLQPGDKMAGRHGNKGVVSRIVPVEDMPYMADG 1179
R L GDELP G+ ++ KVYVA KR+L+ GDKMAGRHGNKG+V++IV EDMP++ DG
Sbjct: 1037 DRFTLEVGDELPAGIVRLAKVYVAKKRKLKVGDKMAGRHGNKGIVAKIVRDEDMPFLEDG 1096
Query: 1180 RPVDIVLNPLGVPSRMNVGQILEVHLGWAAKGLGYKIGDMLQAGAKAAEVRKFLEEIYNS 1239
P+DIVLNPLGVPSRMN+GQI E L WA + + K + GA EV
Sbjct: 1097 TPMDIVLNPLGVPSRMNIGQIFETVLAWAGEKMNKKYATPIFDGASTEEV---------- 1146
Query: 1240 EGKKENLNELNDQEIMELAGNLTTGVPFATPVFDGADEAEIKAMLRLAGMPESGQITLHD 1299
A L AG+P G+ L D
Sbjct: 1147 -----------------------------------------AAELDAAGLPSFGRTYLFD 1165
Query: 1300 GRTGDAFERQVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEME 1359
G TG F++ VTVG + LKL HLVDDKMHARS GPYSL+TQQPLGGKAQFGGQRFGEME
Sbjct: 1166 GLTGKQFDQPVTVGIAYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEME 1225
Query: 1360 VWALEAYGASYVLQEMLTVKSDDVNGRTKVYENIVKGEHKIDAGMPESFNVLVKEIRSLA 1419
VWALEA+GAS+VLQE+LTVKSDDV GR K YE+IVKGE+ +PESFNVLV E+R LA
Sbjct: 1226 VWALEAFGASHVLQEILTVKSDDVIGRAKAYESIVKGENLPKPNIPESFNVLVHELRGLA 1285
Query: 1420 IDIDLE 1425
++I L+
Sbjct: 1286 LEITLD 1291
Score = 240 bits (613), Expect = 6e-67
Identities = 156/496 (31%), Positives = 251/496 (50%), Gaps = 52/496 (10%)
Query: 12 RKSFAKRASVLDVPFLLATQLESYTAFLQAELPTAKRRNQGLQAAFGSIFPIVSHSGNAR 71
RKSF+ V D P L QL+S+ F Q + P KRR GL F FPI N
Sbjct: 9 RKSFSSIKVVKDYPDFLDIQLQSFKDFFQLDTPAEKRRQDGLFKVFSENFPISDSRENFT 68
Query: 72 LEFVSYQLAEPAFDVKECQQRGLTFASALRAKVRLVIMDREAPDTVKEVKEQEVYMGEIP 131
LEF+ Y + P + V EC RGLT++ L+AK+RL+ D + D E EQEV++G +P
Sbjct: 69 LEFIDYTVDPPKYSVGECIDRGLTYSVPLKAKLRLLCSDEDNEDF--ETIEQEVFLGNLP 126
Query: 132 LMTTTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARVIPYRGSWLDFEF 191
MT GSFVING ERVIVSQLHRSPGVFF + H++G L+SAR+IP++GSW++F
Sbjct: 127 YMTEKGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARIIPFKGSWIEFAT 183
Query: 192 DPKDILFFRVDRRRKMPVTTLLKAIGLTNEQILAGFFEFDDFKLLKNGADFTLVPERLRG 251
D ++++ +DR++K PVTTLL+AIG +++ + F + ++ N ++ +
Sbjct: 184 DINNVMYAYIDRKKKFPVTTLLRAIGYGSDKAILDLFGLSE-EIEANKSNLKKI------ 236
Query: 252 ETARFDFCDKAGKVIVPKDKRITAKHIRDLDAAGIKHIAVPDDFLVGRVIGHNIIDKDSG 311
G+ + + + + D D ++ D
Sbjct: 237 ----------VGRKLAARVLKTWVEDFVDEDTG-------------------EVVSIDRN 267
Query: 312 EVIANANDEITESLLAKLREAGVAEFQTLYTNDLDRG--AFISNTLRADDTATKQAARVA 369
EV+ + +T+ + + ++G A+ L+ +D++ + I NTL+ D++ +++ A
Sbjct: 268 EVLLERDSVLTDEDIELILDSG-AKSVILHRDDVNIADYSIIYNTLQKDNSNSEKEAVEV 326
Query: 370 IYRMMRPGEPPTEEAVEILFNGLFYSDDRYDLSGVGRMKFNRRIGRPDVVEYKVTIKNAP 429
IYR +R E P E + +GLF+SD RYDL VGR + N+++G D+ K+ +
Sbjct: 327 IYRQLRNTEAPDEATAREVIHGLFFSDKRYDLGEVGRYRINKKLGL-DIEAEKIVL---- 381
Query: 430 HKTEALAKAIAEFTGA--NQGTVQEILNELQYGSRAAAENLTEEAAHTLAAQLKALGANV 487
TE + + G ++ V +I + R E L + LA + + +
Sbjct: 382 -TTEDIINIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLYSQFGVGLARMARTIRERM 440
Query: 488 EVREQLTLSPRDIVES 503
VR+ P D++ +
Sbjct: 441 NVRDNEDFKPVDLINA 456