Pairwise Alignments

Query, 358 a.a., site-specific recombinase XerD from Dechlorosoma suillum PS

Subject, 344 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score = 56.6 bits (135), Expect = 9e-13
 Identities = 91/373 (24%), Positives = 138/373 (36%), Gaps = 64/373 (17%)

Query: 3   TIRKKGDFQWHCQVRRKGYPNQT--RTFNTKGEAEKWARDIEGEMDRGLFQDRREADKNT 60
           T+RK     W C++   G   +   + F TKGEA  +    E    +  +Q+ +E D+ T
Sbjct: 2   TVRKNPAGGWICELYPNGAKGKRIRKKFATKGEALAF----EQHTVQNPWQEEKE-DRRT 56

Query: 61  LAQVL--------CRFRDEVVPSHKGRDAETFRINALLKD----RISSYKMSALSGSALS 108
           L +++           +D +        A       L +D      S Y+   L G    
Sbjct: 57  LKELVDSWYSAHGITLKDGLKRQLAMHHAFECMGEPLARDFDAQMFSRYREKRLKGEYAR 116

Query: 109 DFIARRQKLVSSATVRREIDIISSAVTKARKAWGIHLPENPVALIERPRPAKARERRLNW 168
              + R K VS  T+  E+    +   +  +  G    ENP   ++  RP +  E  + W
Sbjct: 117 ---SNRVKEVSPRTLNLELTYFRAVFNELNRL-GEWKGENP---LKNMRPFRTEEMEMAW 169

Query: 169 DEETRLMQAL-EDHADDHEGSKQYRKGSRNPWIKPFVQLAIHTAMRRGELLSLRWEDVSL 227
               ++ Q L E    DH            P ++  V++ + T  R  E  SL+   ++ 
Sbjct: 170 LTHDQISQLLGECKRHDH------------PDLETVVRICLATGARWSEAESLKKSQLAK 217

Query: 228 EERTAHLPETKNGDARTVPLSSLAAATLRQLPHDPSGLVFPITADAVKKGFERARNRARA 287
            + T     TK    RTVP+S         LP D  G +F     A +   ER      A
Sbjct: 218 YKIT--YTNTKGRKNRTVPISK---ELYESLPDDKKGRLFSDCYGAFRSALERTGIELPA 272

Query: 288 DYVAECERNGTRPDDRLLDLRLHDLRHEATSRIAEKLDNILELSAVTGHKDIRMLKRYYH 347
             +                   H LRH   S       NIL L  V GH DI+M  RY H
Sbjct: 273 GQLT------------------HVLRHTFASHFMMNGGNILVLQRVLGHTDIKMTMRYAH 314

Query: 348 --PKASDLALKLD 358
             P   + A+KL+
Sbjct: 315 FAPDHLEDAVKLN 327