Pairwise Alignments

Query, 212 a.a., Probable alternative RNA polymerase sigma-D factor SigD from Mycobacterium tuberculosis H37Rv

Subject, 177 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 47/155 (30%), Positives = 71/155 (45%), Gaps = 11/155 (7%)

Query: 55  VVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAH 114
           ++R+ +  VG        A+D+ QE  L  + A   +  R RP L +L  IA + + D  
Sbjct: 7   LLRFVQGMVGNAHL----AEDLVQETLLRAVAAQQAFAGRSRP-LTWLSAIALNALRDHF 61

Query: 115 RAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNEL----LEILPAKQREILILRV 170
           R     R   A   PE ++  A   + A+ A     M +     L  LP + RE+L+L  
Sbjct: 62  RRPATRREESAA--PEDFAGLADQCEDAVTALMKAEMGDCITAHLSALPDRLREVLVLHD 119

Query: 171 VVGLSAEETAAAVGSTTGAVRVAQHRALQRLKDEI 205
           + G    E AAA+G T G  RV  HRA   L++ +
Sbjct: 120 MGGAGHAEVAAALGITEGNARVLLHRARAALRERL 154