Pairwise Alignments

Query, 212 a.a., Probable alternative RNA polymerase sigma-D factor SigD from Mycobacterium tuberculosis H37Rv

Subject, 169 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score = 70.1 bits (170), Expect = 2e-17
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 8/163 (4%)

Query: 39  GDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRYRDRGRPF 98
           GD  + R +L  +R ++V Y   R+    R+ +  +D+ QE  L+       Y DR RPF
Sbjct: 7   GDEASYRHLLHALRRLLVAYYGRRMADAARADV--EDLVQETLLSLHAKRETY-DRARPF 63

Query: 99  LAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRMNELLEIL 158
            A+ + IA +K+ D +R  GR R +    L E   A++  + +    D    +  LL  L
Sbjct: 64  TAWFFSIARYKLIDHYRGRGR-RMFSEVELDETLEAESSVDAVTARMD----VERLLNEL 118

Query: 159 PAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
           P +QR+++    + G S  E A   G T  A RV  HR L+ L
Sbjct: 119 PERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVL 161